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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 09:00:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EX20LIB5_UP_002_C09_10FEB2004_075 Brassica napus EX20LIB5 Brassica napus cDNA 5', mRNA sequence.
EE490381.1:324-343
CTGAGTCGACCGGAGGTGAGCACTGCCACG324AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
EX20LIB5_UP_002_E06_10FEB2004_040 Brassica napus EX20LIB5 Brassica napus cDNA 5', mRNA sequence.
EE490398.1:324-343
CTGAGTCGACCGGAGGTGAGCACTGCCACG324AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
EX20LIB5_UP_005_G09_18FEB2004_067 Brassica napus EX20LIB5 Brassica napus cDNA 5', mRNA sequence.
EE490644.1:420-439
CTGAGTCGACCGGAGGTGAGCACTGCCACG420AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
EX2PLCL1_UP_043_C04_03NOV2004_028 Brassica napus EX2PLCL1 Brassica napus cDNA 5', mRNA sequence.
EE502963.1:324-343
CTGAGTCGACCGGAGGTGAGCACTGCCACG324AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
EX2PLCL3_UP_022_D06_08MAY2003_021 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE503461.1:325-344
CTGAGTCGACCGGAGGTGAGCACTGCCACG325AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:7210096-7210115
CTGAGTCGACCGGAGGTGAGCACTGCCACG7210096AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7264123-7264142
CTGAGTCGACCGGAGGTGAGCACTGCCACG7264123AGAAGGAGCGGTGGAAATCTTCGCCGACTGGAGGAATGTGGTGGCGGATT
Vicia faba genome assembly, chromosome: 1L.
OX451736.1:409614961-409614980
TGCATTAATTGGTATCAGTAATTTCACTGC409614961AGAAGGAGCGGTGGAAATCTCCACCCTTCAAATTTCACTTTTTCATTTTC
Sequence 18003 from patent US 7750207.
GX323928.1:101-120
AATCCGCCACCACATTCCTCCAGTCGGCGA101AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
MB68-7G PZ204.BNlib Brassica napus cDNA clone pMB68-7G 5' similar to 33 kDa oxygen-evolving protein|Arabidopsis thaliana|X52428, mRNA sequence.
AI352833.1:58-77
AATCCGCCACCACATTCCTCCAGTCGGCGA58AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BN25.047K15F020109 BN25 Brassica napus cDNA clone BN25047K15, mRNA sequence.
CD823102.1:74-93
AATCCGCCACCACATTCCTCCAGTCGGCGA74AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BN25.064H07F020417 BN25 Brassica napus cDNA clone BN25064H07, mRNA sequence.
CD826607.1:79-98
AATCCGCCACCACATTCCTCCAGTCGGCGA79AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_006_B11_19DEC2003_093 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN730241.1:73-92
AATCCGCCACCACATTCCTCCAGTCGGCGA73AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_024_C04_12JAN2004_028 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN731892.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_008_A09_20JAN2004_079 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN735739.1:74-93
AATCCGCCACCACATTCCTCCAGTCGGCGA74AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_017_H05_21JAN2004_033 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN736633.1:76-95
AATCCGCCACCACATTCCTCCAGTCGGCGA76AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_019_E02_22JAN2004_008 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN736764.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
Brassica oleracea var. viridis mRNA, clone: KALE-076F17, 5' end sequence.
DK484742.1:74-93
AATCCGCCACCACATTCCTCCAGTCGGCGA74AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCCGTCGACTCAG
Brassica oleracea var. viridis mRNA, clone: KALE-150O20, 5' end sequence.
DK513257.1:78-97
AATCCGCCACCACATTCCTCCAGTCGGCGA78AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNDH2DCT_UP_001_A08_09JUN2004_064 Brassica napus seeds BNDH2DCT Brassica napus cDNA 5', mRNA sequence.
DW997088.1:127-146
AATCCGCCACCACATTCCTCCAGTCGGCGA127AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
73ETGS36_UP_013_B01_21MAY2005_013 73ETGS36 Brassica napus cDNA 5', mRNA sequence.
EE445732.1:76-95
AATCCGCCACCACGTTCCTCCAGTCGGCGA76AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
74ETGS48_UP_018_F01_28APR2005_005 74ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE447736.1:80-99
AATCCGCCACCACATCCCTCCAGTCGGCGA80AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNBS4DCT_UP_018_G04_25MAR2005_020 Brassica napus seeds BNBS4DCT Brassica napus cDNA 5', mRNA sequence.
EE454787.1:105-124
AATCCGCCACCACATTCCTCCAGTCGGCGA105AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNBS4DCT_UP_024_D12_26MAR2005_090 Brassica napus seeds BNBS4DCT Brassica napus cDNA 5', mRNA sequence.
EE455214.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
DHBN6DCT_UP_036_C09_18FEB2005_075 BRASSICA NAPUS SEEDS BNDH6DCT Brassica napus cDNA 5', mRNA sequence.
EE484620.1:77-96
AATCCGCCACCACATTCATCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
EX20LIB5_UP_001_B11_10FEB2004_093 Brassica napus EX20LIB5 Brassica napus cDNA 5', mRNA sequence.
EE490287.1:62-81
AATCCGCCACCACATTCCTCCAGTCGGCGA62AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
EX20LIB5_UP_003_C05_10FEB2004_043 Brassica napus EX20LIB5 Brassica napus cDNA 5', mRNA sequence.
EE490447.1:58-77
AATCCGCCACCACATTCCTCCAGTCGGCGA58AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
25RDBNM_UP_036_F03_02MAR2004_021 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
EE510687.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_065_E05_10NOV2005_039 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
EE515498.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_066_B12_10NOV2005_094 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
EE515559.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_089_D11_08MAR2006_089 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES914781.1:73-92
AATCCGCCACCACATTCCTCCAGTCGGCGA73AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_102_B04_9MAR2006_030 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES915407.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_105_A07_9MAR2006_063 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES916872.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_137_A07_13DEC2006_063 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES918785.1:73-92
AATCCGCCACCACATTCCTCCAGTCGGCGA73AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
24RDBNH_UP_185_A03_14DEC2006_031 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES923284.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_105_H04_06MAR2006_018 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES928641.1:76-95
AATCCGCCACCACGTTCCTCCAGTCGGCGA76AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
26RDBNT_UP_107_B04_09MAR2006_030 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES928759.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCGCCTCCGGTCGACTCAG
BNAEN1GH_UP_002_G12_12MAY2006_084 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES986554.1:77-96
AATCCGCCACCACATTCCTCCAGTCGGCGA77AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNAEN1GH_UP_071_H04_22JUL2006_018 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES991748.1:65-84
AATCCGCCACCACATTCCTCCAGTCGGCGA65AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNAEN3GH_UP_042_B12_01SEP2006_094 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES995710.1:221-240
AATCCGCCACCACATTCCTCCAGTCGGCGA221AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNAEN3GH_UP_058_D11_02SEP2006_089 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES996879.1:54-73
AATCCGCCACCACATTCCTCCAGTCGGCGA54AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNSCS2CT_UP_157_B03_23APR2007_029 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV027259.1:29-48
TCCGCCACCACATTCCTCCAGTCGGCGA29AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
BNSCS4CT_UP_153_B01_20MAY2007_013 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV070189.1:81-100
AATCCGCCACCACATTCCTCCAGTCGGCGA81AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0187030 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV090941.1:121-140
AATCCGCCACCACATTCCTCCAGTCGGCGA121AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0188730 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV091909.1:145-164
ATCCGCCACCACGGTGCCTCCAGTCGGCGA145AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0191788 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093787.1:112-131
AGGGCGCCACCACATTCCTCCAGTCGGCGA112AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0177508 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV098396.1:117-136
AATCCGCCACCACATTCCTCCAGTCGGCGA117AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0178106 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV098715.1:110-129
AATCCGCCACCACATTCCGTTAGTCGGCGA110AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0114796 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV109484.1:107-126
AATCCGCCACCACATTCCTCCAGTCGGCGA107AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0196015 Brassica napus Stem library Brassica napus cDNA, mRNA sequence.
EV127462.1:112-131
AATCCGCCACCACATTCCTCCAGTCGGCGA112AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
0205805 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV139879.1:105-124
AATCCGCCACCACATTCCTCCAGTCGGCGA105AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
Brassica napus 33 kDa oxygen evolving protein of photosystem II (psbo) mRNA, complete cds.
AF139818.1:53-72
AATCCGCCACCACATTCCTCCAGTCGGCGA53AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61912708-61912727
AATCCGCCACCACATTCCTCCAGTCGGCGA61912708AGATTTCCACCGCTCCTTCTCGTGGCAGTGCTCACCTCCGGTCGACTCAG

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