GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:05:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Meles meles genome assembly, chromosome: 7.
OV277447.1:90941596-90941614
CCCTCTAGGACTCATTTTCATGCCTGAAGC90941596AGAATTTACACTCCCTTCCCATCGCAGATTTAGCTCCTGTCCCAGGCTC
Corylus americana cultivar Rush chromosome 2.
CP125815.1:5963371-5963389
ATGTATTGGTAGTCAAATTTTACTTTGCAA5963371AGAATTTACACTCCCTTCCACTTGATTATTCACCTTGTCAATATGTAAA
Corylus americana cultivar Winkler chromosome 2.
CP125826.1:5860621-5860639
ATGTATTGGTAGTCAAATTTTATTTTGCAA5860621AGAATTTACACTCCCTTCCACTTGATTATTCACCTTGTCAATATGTAAA
Corylus avellana genome assembly, chromosome: ca2.
LR899424.1:6965245-6965263
ATGTATTGGTAGTCAAATTTTACTTTGCAA6965245AGAATTTACACTCCCTTCCACTTGATTATTCACCTTGTCAATATGTAAA
Corylus avellana genome assembly, chromosome: ca2.
LR899424.1:6977822-6977840
ATGTATTGGTAGTCAAATTTTACTTTGCAA6977822AGAATTTACACTCCCTTCCACTTGATTATTCACCTTGTCAATATGTAAA
Phorcus lineatus genome assembly, chromosome: 3.
OV121083.1:14062749-14062767
TTCACGTCAATTAACATAACTAAAATTGTC14062749AGAATTTACACTCCCTTCCTGAAACTAATTTGCATTGGCCAGGTCCTTA
Hydrotaea cyrtoneurina genome assembly, chromosome: 3.
OY282514.1:50062736-50062754
GAAAAATTCTCTTGCTGTATTTCCATCATT50062736AGAATTTACACTCCCTTCCGGTTTGTCAACAATTAGTCCCATTTTTATA
Acomys percivali genome assembly, chromosome: 9.
OU015750.1:627027-627045
AGCCCAGGTAGGCAAAGAGTGGGGTTTGGG627027GGAAGGGAGTGTAAATTCTTCTCCCTGGCAACTCTCTGGGGGCAGCTGG
Rhinatrema bivittatum genome assembly, chromosome: 4.
LR584390.1:241099468-241099486
TTCTTTCTGTATCTTGGGGAATGATTCAGG241099468GGAAGGGAGTGTAAATTCTGACAATATAATGTTTTTACTCAAAGCATGC
Osmerus eperlanus genome assembly, chromosome: 14.
OY830027.1:7179674-7179692
GGAAAGTTTTAAGGGGGAGAAAAGGGGAGG7179674GGAAGGGAGTGTAAATTCTAGGAATTACAATGATTTTGCCAGTTTCTCT
Carpinus viminea chromosome 3.
CP054669.1:40148281-40148299
TTTACATATTGACAAGGTGAATAATCAAGT40148281GGAAGGGAGTGTAAATTCTTTGCAAAGTAAAATATGACTACTAATTCAT
Ligustrum vulgare genome assembly, chromosome: 12.
OY743179.1:54660780-54660798
TACTCTAGCGAAGGATTTTCTATATTGATT54660780GGAAGGGAGTGTAAATTCTTCAAACTTTTGTGCTTTCTCGGCGAGATCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAATTTACACTCCCTTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAATTTACACTCCCTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=AGAATTTACACTCCCTTCC&k=0&no_gap=0&offset=0&limit=50
0.170 | 0.043 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGGGAGTGTAAATTCT&k=0&no_gap=0&offset=0&limit=43
0.173 | 0.003 | cgi_end;

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