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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 14:38:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus spretus genome assembly, chromosome: 8.
OW971687.1:62576172-62576190
GGTGGTTGTTATGGAAACAGATTGAATAGA62576172AGACCATAAATGGGAGACTGATGTTTTAAATATTACACAATGAAGAAAA
Solea senegalensis genome assembly, chromosome: L.
OW185643.1:24885224-24885242
CACATCAGGTTCTTCCACTGGTATCAGCCA24885224AGACCATAAATGGGAGACTGCAGTGAGCAGAGACTGGGAAAACAGCCTG
Picea abies EST, clone K0000100014H04F1.
AM169693.1:225-243
ACGTTTTTGCTTTCAGCGGGCCAGCGCCAG225AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea abies EST, clone K0000200007E02F1.
AM170614.1:329-347
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG329AGACCATAAATGGGAGACTGGCCATGCTTGGA
Picea abies EST, clone K0000200009G10F1.
AM170785.1:195-213
ACGTTTTTGCTTTCAGCGGGCCAGCGCCAG195AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea abies EST, clone K0000200009H09F1.
AM170795.1:173-191
ACGTTTTTGCTTTCAGCGGGCCAGCGCCAG173AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea abies EST, clone K0000200021B12F1.
AM171633.1:377-395
ACGTTTTTGCCTTCAGCGGGCCTGCGCCAG377AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCT
RTDS3_2_G05.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_2_G05_A022 3', mRNA sequence.
CF397230.1:177-195
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG177AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
RTDS3_2_G05.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_2_G05_A022 5', mRNA sequence.
CF397261.1:409-427
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG409AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
RTDS1_6_F04.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_6_F04_A015 3', mRNA sequence.
CF471680.1:145-163
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG145AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCCGTCGG
RTDS1_6_F04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_6_F04_A015 5', mRNA sequence.
CF471817.1:318-336
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG318AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCCGTCGG
RTDS1_8_D11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_8_D11_A015 3', mRNA sequence.
CF471997.1:318-336
ACGTGTTTGCTTTCGGAGGGCCAGCACCGG318AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
RTDS1_8_D11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_8_D11_A015 5', mRNA sequence.
CF472103.1:314-332
ACGTGTTTGCTTTCGGAGGGCCAGCACCGG314AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
RTDS1_9_F09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_9_F09_A015 3', mRNA sequence.
CF472360.1:200-218
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG200AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
RTDS1_9_F09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_9_F09_A015 5', mRNA sequence.
CF472459.1:318-336
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG318AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
GQ0025.BR_B02 GQ002: Female cones developmental sequence Picea glauca cDNA clone GQ0025_B02 5', mRNA sequence.
CK440872.2:275-293
ACGTTTTTGCTTTCAGCGGGCCAGCGCCAG275AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
GQ0011.BR_I09 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0011_I09 5', mRNA sequence.
CK442036.2:187-205
ACGTTTTTGCATTCGGCGGGCCAGCGCCAG187AGACCATAAATGGGAGACTGGCAATGCTCGGATTCGTCTCAGCTATTTG
GQ0013.BR.1_H14 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013_H14 5', mRNA sequence.
CK442572.2:404-422
ACGTTTTTGCATTCGGCGGGCCAGCGCCAG404AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCGGCTATTGG
GQ0015.BR_D13 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0015_D13 5', mRNA sequence.
CK443674.2:392-410
ACGTTTTTGCATTCGGCGGGCCAGCGCCAG392AGACCATAAATGGGAGACTGGCAATGCTCGGATTCGTCTCAGCTATTTG
NDL1_4_B05.b1_A029 Needles control Pinus taeda cDNA clone NDL1_4_B05_A029 3', mRNA sequence.
CO169003.1:79-97
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG79AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
NDL1_4_B05.g1_A029 Needles control Pinus taeda cDNA clone NDL1_4_B05_A029 5', mRNA sequence.
CO169070.1:370-388
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG370AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
NDL1_15_E01.g1_A029 Needles control Pinus taeda cDNA clone NDL1_15_E01_A029 5', mRNA sequence.
CO170625.1:357-375
ACGTTTTTGCTTTCGGTGGGCCTGCACCAC357AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
NDL1_28_H10.b1_A029 Needles control Pinus taeda cDNA clone NDL1_28_H10_A029 3', mRNA sequence.
CO172239.1:79-97
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG79AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
NDL1_28_H10.g1_A029 Needles control Pinus taeda cDNA clone NDL1_28_H10_A029 5', mRNA sequence.
CO172313.1:361-379
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG361AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
NDL1_55_F11.b1_A029 Needles control Pinus taeda cDNA clone NDL1_55_F11_A029 3', mRNA sequence.
CO175517.1:212-230
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG212AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
NDL1_55_F11.g1_A029 Needles control Pinus taeda cDNA clone NDL1_55_F11_A029 5', mRNA sequence.
CO175603.1:382-400
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG382AGACCATAAATGGGAGACTAGCCATGCTCGGATTCGTCTCAGCTCTCGG
WS0017.B21_P07 WS-ES-A-1 Picea glauca cDNA clone WS0017_P07 3', mRNA sequence.
CO229446.1:383-401
ACGTTTTTGCTTTCAGCGGGCCAGCGCCAG383AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCGGCTGTTGG
WS00712.B21_D11 WS-PS-N-A-8 Picea glauca cDNA clone WS00712_D11 3', mRNA sequence.
CO239962.1:341-359
ACGTTTTTGCTTTCAGCGGGCCAGCGCCAG341AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
GQ0166.B3_E02 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone GQ0166_E02 5', mRNA sequence.
CO481496.2:387-405
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG387AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS02812.C21_I08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02812_I08 5, mRNA sequence.
DR483827.1:407-425
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG407AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS02719.B21_F12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02719_F12 5, mRNA sequence.
DR525199.1:402-420
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG402AGACCATAAATGGGAGACTGGCCATGCTCGGATTTGTCTCAGCTGTTGG
WS02742.C21_G06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02742_G06 5, mRNA sequence.
DR534117.1:282-300
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG282AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS02750.C21_C12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02750_C12 5, mRNA sequence.
DR536785.1:324-342
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG324AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
GQ027116.B3_G07 GQ099: Mixed spruce tissues Picea glauca cDNA clone GenomeQuebec_Id:GQ027116_G07 5', mRNA sequence.
DV994646.1:187-205
ACGTTTTTGCATTCGGCGGGCCAGCGCCAG187AGACCATAAATGGGAGACTGGCAATGCTCGGATTCGTCTCAGCTATTTG
WS0382.C21_G17 SS-B-23 Picea sitchensis cDNA clone WS0382_G17 3', mRNA sequence.
ES259898.1:144-162
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG144AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS0402.C21_A19 SS-S-25 Picea sitchensis cDNA clone WS0402_A19 3', mRNA sequence.
ES262340.1:323-341
ACCTGTTTGCCTTCGGTGGAGCAGCGCCAG323AGACCATAAATGGGAGACTGGCTATGCTCGGATTCGTCTCAGCTATTGG
WS0403.C21_G07 SS-S-25 Picea sitchensis cDNA clone WS0403_G07 3', mRNA sequence.
ES262728.1:74-92
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG74AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS0403.C21_G14 SS-S-25 Picea sitchensis cDNA clone WS0403_G14 3', mRNA sequence.
ES262734.1:285-303
ACTTGTTTGCCTTCGGCGGGCCAGCGCCAG285AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTTG
WS0403.C21_K10 SS-S-25 Picea sitchensis cDNA clone WS0403_K10 3', mRNA sequence.
ES262811.1:320-338
ACTTGTTTGCCTTCGGCGGGCCAGCGCCAG320AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTTG
WS0404.C21_J22 SS-S-25 Picea sitchensis cDNA clone WS0404_J22 3', mRNA sequence.
ES263105.1:313-331
ACTTGTTTGCCTTCGGCGGGCCAGCGCCAG313AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTTG
WS0411.C21_P14 SS-NE-A-26 Picea sitchensis cDNA clone WS0411_P14 3', mRNA sequence.
ES667267.1:255-273
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG255AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS0412.C21_G10 SS-NE-A-26 Picea sitchensis cDNA clone WS0412_G10 3', mRNA sequence.
ES667345.1:250-268
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG250AGACCATAAATGGGAGACTGGCCATGCTCGGATTTGTCTCAGCTGTTGG
WS0421.C21_H18 SS-NE-27 Picea sitchensis cDNA clone WS0421_H18 3', mRNA sequence.
ES667970.1:256-274
ACTTGTTTGCCTTCGGTGGGCCAGCGCCAG256AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCGGCTATTGG
WS0421.C21_M12 SS-NE-27 Picea sitchensis cDNA clone WS0421_M12 3', mRNA sequence.
ES668043.1:309-327
ACTTGTTTGCCTTCGGTGGGCCAGCGCCAG309AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTGG
WS0422.C21_L12 SS-NE-27 Picea sitchensis cDNA clone WS0422_L12 3', mRNA sequence.
ES668303.1:376-394
ACTTGTTTGCCTTCGGCGGGCCAGCGCCAG376AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCGGCTATTGG
WS0424.C21_A04 SS-NE-27 Picea sitchensis cDNA clone WS0424_A04 3', mRNA sequence.
ES668656.1:380-398
ACTTGTTTGCCTTCGGTGGGCCAGCGCCAG380AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCGGCTATTGG
WS0424.C21_C04 SS-NE-27 Picea sitchensis cDNA clone WS0424_C04 3', mRNA sequence.
ES668698.1:375-393
ACTTGTTTGCCTTCGGTGGGCCAGCGCCAG375AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTGG
WS0424.C21_I04 SS-NE-27 Picea sitchensis cDNA clone WS0424_I04 3', mRNA sequence.
ES668812.1:388-406
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG388AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
WS0424.C21_M21 SS-NE-27 Picea sitchensis cDNA clone WS0424_M21 3', mRNA sequence.
ES668899.1:396-414
ACTTGTTTGCCTTCGGTGGGCCAGCGCCAG396AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCGGCTATTGG
WS04210.C21_L20 SS-NE-27 Picea sitchensis cDNA clone WS04210_L20 3', mRNA sequence.
ES669193.1:333-351
ACCTGTTTGCCTTCGGTGGAGCAGCGCCAG333AGACCATAAATGGGAGACTGGCTATGCTCGGATTCGTCTCAGCTATTGG
WS04211.C21_J04 SS-NE-27 Picea sitchensis cDNA clone WS04211_J04 3', mRNA sequence.
ES669467.1:367-385
ACTTGTTTGCCTTCGGTGGGCCAGCGCCAG367AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTGG
WS04213.C21_B04 SS-NE-27 Picea sitchensis cDNA clone WS04213_B04 3', mRNA sequence.
ES669969.1:385-403
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG385AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
TSA: Punica granatum pom_peel_seq_9986.contig1 mRNA sequence.
JI990918.1:80-98
ACGTGTTTGCTTTCGGAGGGCCAGCGCCGG80AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTCGG
Picea glauca clone GQ03113_H09 mRNA sequence.
BT107847.1:290-308
ACGTTTTTGCCTTCAGCGGGCCGGCGCCAG290AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea glauca clone GQ03511_A10 mRNA sequence.
BT114234.1:409-427
ACGTTTTTGCATTCGGCGGGCCAGCGCCAG409AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCGGCTATTGG
Picea glauca clone GQ03603_L24 mRNA sequence.
BT114857.1:559-577
ACCTGTTTGCCTTCGGTGGGCCAGCGCCAG559AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTATTGG
Picea glauca clone GQ03606_A02 mRNA sequence.
BT114953.1:540-558
ACCTGTTTGCCTTCGGTGGGCCAGCCCCAG540AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea glauca clone GQ03906_C09 mRNA sequence.
BT117642.1:400-418
ACGTTTTTGCCTCCAGCGGGCCGGCGCCAG400AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea sitchensis clone WS02812_I08 unknown mRNA.
EF083635.1:407-425
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG407AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea sitchensis clone WS02719_F12 unknown mRNA.
EF084929.1:399-417
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG399AGACCATAAATGGGAGACTGGCCATGCTCGGATTTGTCTCAGCTGTTGG
Picea sitchensis clone WS02742_G06 unknown mRNA.
EF676564.1:284-302
ACGTTTTTGCCTTCAGCGGGCCAGCGCCAG284AGACCATAAATGGGAGACTGGCCATGCTCGGATTCGTCTCAGCTGTTGG
Picea sitchensis clone WS02756_G22 unknown mRNA.
EF676858.1:293-311
ACATTTTTGCTTTCAGCGGGCCAGCGCCAG293AGACCATAAATGGGAGACTCGCCATGCTCGGATTCGTCTCAGCTGTTGG
Pinus taeda isolate 7649 anonymous locus 2_114_01 genomic sequence.
FJ089707.1:174-192
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG174AGACCATAAATGGGAGACTAGCAATGCTCGGATTCGTCTCAGCTCTGGG
Pinus taeda isolate 7647 anonymous locus 2_114_01 genomic sequence.
FJ089711.1:174-192
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG174AGACCATAAATGGGAGACTAGCAATGCTCGGATTCGTCTCAGCTCTGGG
Pinus taeda isolate 7646 anonymous locus 2_114_01 genomic sequence.
FJ089716.1:174-192
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG174AGACCATAAATGGGAGACTAGCAATGCTCGGATTCGTCTCAGCTCTGGG
Pinus armandii early light-induced protein (ELIP) gene, partial cds.
JQ071222.1:203-221
ACGTGTTTGCCTTCAGTGGGCCAGCGCCAG203AGACCATAAATGGGAGACTTGCCATGCTCGGATTCGTCTCGGCCGTGGG
Pinus radiata isolate 7656 hypothetical protein (2_114_01) gene, partial cds.
JQ262383.1:174-192
ACGTTTTTGCTTTCGGTGGGCCTGCACCAG174AGACCATAAATGGGAGACTAGCAATGCTCGGATTCGTCTCAGCTCTGGG
Amphipoea oculea genome assembly, chromosome: 17.
OX243878.1:2315759-2315777
TATAGATAGATAGATACAGATTTTTGGAAC2315759AGACCATAAATGGGAGACTATCGTTGGTATAAGGATATACGGACCCTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGACCATAAATGGGAGACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACCATAAATGGGAGACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.566 | 2.558 | search_plus_done; http://172.18.8.135:50400/match?q=AGACCATAAATGGGAGACT&k=0&no_gap=0&offset=0&limit=50
2.627 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=AGTCTCCCATTTATGGTCT&k=0&no_gap=0&offset=0&limit=0
2.627 | 0.000 | cgi_end;

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