GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:45:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1070 from patent US 8937215.
HK371708.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 8937215.
HK371710.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 9574200.
KH564262.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 9574200.
KH564264.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 10227607.
MM771261.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 10227607.
MM771263.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 10883115.
MX197427.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 10883115.
MX197429.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 11530418.
OO985938.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 11530418.
OO985940.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_004_L17, 5'end.
DB921378.1:353-379
AAGATGGCAGAGTGCTCCAAATCAGCGGAG353AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_024_M20, 5'end.
DB928617.1:350-376
AAGATGACAGAGTGCTCCAAATCAGCGGAG350AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_032_K23, 5'end.
DB931493.1:350-376
AAGATGACAGAGTGCTCCAAATCAGCGGAG350AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
CV01007B1A09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01007B1A09.f1, mRNA sequence.
DV442573.1:324-350
AAGATGACAGAGTGCTCCAAATCAGCGGAG324AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
CV02003B1A04.f1 CV02-normalized library Manihot esculenta cDNA clone CV02003B1A04.f1, mRNA sequence.
DV450142.1:297-323
AAGATGACAGAGTGCTCCAAATCAGCGGAG297AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
U_SX-PL011N01_A_plate34o22.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG983733.1:361-387
AAGATGACAGAGTGCTCCAAATCAGCGGAG361AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGAAGCA
U_UZ-100602_plate11e17.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991072.1:367-393
AAGATGACAGAGTGCTCCAAATCAGCGGAG367AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
U_UZ-100602_plate11o18.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991282.1:366-392
AAGATGACAGAGTGCTCCAAATCAGCGGAG366AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
U_UZ-100602_plate37p06.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG999532.1:311-337
AAGATGACAGAGTGCTCCAAATCAGCGGAG311AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_004_L17, 3'end.
DB940021.1:332-358
TGCTGCGCTCCACACGATGCCAAGTATCAT332TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGCCATCTT
Manihot esculenta mRNA, clone: CAS01_024_M20, 3'end.
DB946436.1:332-358
TGCTGCGCTCCACACGATGCCAAGTATCAT332TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta mRNA, clone: CAS01_032_K23, 3'end.
DB948942.1:330-356
TGCTGCGCTCCACACGATGCCAAGTATCAT330TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Quercus dentata isolate Qdleaves-2020 chromosome 1.
CP116444.1:31898887-31898913
TACTGCGCTCCACTCTATGCCACTTGTCGT31898887TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus variabilis isolate HB chromosome 1b.
CP129433.1:29822780-29822806
TACTGCGCTCCACTCTATGCCACTTGTCGT29822780TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:31198641-31198667
TACTGCGCTCCACTCTATGCCACTTGTCGT31198641TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus robur genome assembly, chromosome: 1.
OW028765.1:28634895-28634921
TACTGCGCTCCACTCTATGCCACTTGTCGT28634895TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus cerris genome assembly, chromosome: 6.
OY770011.1:30583035-30583061
TACTGCGCTCCACTCTATGCCACTTGTCGT30583035TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACCCTGTCATCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGGAATGTGGAGAAGGAAGAGAAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGGAATGTGGAGAAGGAAGAGAAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.401 | 1.393 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGGAATGTGGAGAAGGAAGAGAAGA&k=0&no_gap=0&offset=0&limit=50
1.559 | 0.158 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTCTCTTCCTTCTCCACATTCCTCT&k=0&no_gap=0&offset=0&limit=31
1.565 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).