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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:32:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus 10 BAC RP23-269H11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC159829.10:81633-81652
AGGAAACCGGAGAGAGCACAACGTAGCAGA81633AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971553.1:17314577-17314596
AGGAAACCGGAGAGAGCACAACGTAGCAGA17314577AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971581.1:17444621-17444640
AGGAAACCGGAGAGAGCACAACGTAGCAGA17444621AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971602.1:17272796-17272815
AGGAAACCGGAGAGAGCACAACGTAGCAGA17272796AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus domesticus genome assembly, chromosome: 10.
OW971616.1:17056759-17056778
AGGAAACCGGAGAGAGCACAACGTAGCAGA17056759AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971644.1:17487842-17487861
AGGAAACCGGAGAGAGCACAACGTAGCAGA17487842AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus molossinus genome assembly, chromosome: 10.
OW971667.1:17492759-17492778
AGGAAACCGGAGAGAGCACAACGTAGCAGA17492759AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus spretus genome assembly, chromosome: 10.
OW971686.1:17881803-17881822
AGGAAACCGGAGAGAGCACAACGTAGCAGA17881803AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTGACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971700.1:17351122-17351141
AGGAAACCGGAGAGAGCACAACGTAGCAGA17351122AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971728.1:17351564-17351583
AGGAAACCGGAGAGAGCACAACGTAGCAGA17351564AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971749.1:17363611-17363630
AGGAAACCGGAGAGAGCACAACGTAGCAGA17363611AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus musculus genome assembly, chromosome: 10.
OW971770.1:17257161-17257180
AGGAAACCGGAGAGAGCACAACGTAGCAGA17257161AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971791.1:17422710-17422729
AGGAAACCGGAGAGAGCACAACGTAGCAGA17422710AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971813.1:17429780-17429799
AGGAAACCGGAGAGAGCACAACGTAGCAGA17429780AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus castaneus genome assembly, chromosome: 10.
OW971826.1:17283434-17283453
AGGAAACCGGAGAGAGCACAATGTAGCAGA17283434AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTGACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OW971863.1:17507670-17507689
AGGAAACCGGAGAGAGCACAACGTAGCAGA17507670AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OX389804.1:23570654-23570673
AGGAAACCGGAGAGAGCACAACGTAGCAGA23570654AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OX390154.1:19085665-19085684
AGGAAACCGGAGAGAGCACAACGTAGCAGA19085665AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Mus musculus genome assembly, chromosome: 10.
OX439022.1:22158389-22158408
AGGAAACCGGAGAGAGCACAACGTAGCAGA22158389AGAGGCAGAGAGAAACAGCACACCACTAGGTTCCCTTACTAACAGGACCA
Onychomys arenicola genome assembly, chromosome: 16.
OX460362.1:57658640-57658659
TATCTGGAAGGGAGTCTTGAGCTGTTAATT57658640AGAGGCAGAGAGAAACAGCAAAATATGGATTTAAAAGAAACTTGTGTGTC
Onychomys arenicola genome assembly, chromosome: 16.
OX460457.1:58536623-58536642
TATCTGGAAGGGAGTCTTGAGCTGTTAATT58536623AGAGGCAGAGAGAAACAGCAAAATATGGATTTAAAAGAAACTTGTGTGTC
Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:303581163-303581182
TTCTGAAAAGAAGTGGCATACAGTAGCTTC303581163AGAGGCAGAGAGAAACAGCAACTGAGGAAGTGGGATAAAACAGGAGTGAA
Pipistrellus pipistrellus genome assembly, chromosome: 18.
LR862374.1:27857579-27857598
TGATTTTTAGAGAGAGTGGGAGGGGGAGGG27857579AGAGGCAGAGAGAAACAGCAATATGTTTCACATGGATTGGTTGCCTCCTG
Sylvilagus floridanus genome assembly, chromosome: 22.
OX463244.1:134595126-134595145
TTTATTTCAAAGGCAGAGTTACAGAGAGGC134595126AGAGGCAGAGAGAAACAGCAGTCTTCCATCTGCTGGTTCACTCCCCAAAT
Erinaceus europaeus genome assembly, chromosome: X.
OX485817.1:36888062-36888081
CAAAGTGTGTTTTTTTAGCTACAGAGAGGC36888062AGAGGCAGAGAGAAACAGCACCAAAGCTTCCTTAAATGTGGAAGGGGCTG
Eptesicus nilssonii genome assembly, chromosome: 21.
OX621300.1:31718694-31718713
TGATTTTTAGAGAGAGTGGGAGGGAGAGGG31718694AGAGGCAGAGAGAAACAGCAATGTGTTTCACATTGATTGGTTGACTCCTG
Pipistrellus nathusii genome assembly, chromosome: 8.
OY882865.1:27474801-27474820
CCTGGTTCAGAGAGAGTGAAAGGGAAGTAG27474801AGAGGCAGAGAGAAACAGCAATGTGAAGAGATACATTAATTGGTTACCTC
Pipistrellus nathusii genome assembly, chromosome: 8.
OY883185.1:27504957-27504976
CCTGGTTCAGAGAGAGTGAAAGGGAAGTAG27504957AGAGGCAGAGAGAAACAGCAATGTGAAGAGATACATTAATTGGTTACCTC
Vespertilio murinus genome assembly, chromosome: 15.
OZ004719.1:29006761-29006780
ATTGATTTTTAGAAAGAGTGGGAGGGAGAG29006761AGAGGCAGAGAGAAACAGCAATGTGTTTCACATCGATTGGTTGCCTCCTG
Anas platyrhynchos genome assembly, chromosome: 1.
LS423611.1:68687315-68687334
GAAGTGGCAGGTGTGGTACAGCATGTTTGC68687315AGAGGCAGAGAGAAACAGCAGAATAACTCATGTTTTTATGTAGTCCTCTG
Streptopelia turtur genome assembly, chromosome: 29.
OU015479.1:4326836-4326855
AATATACTCTGGCTGTTAGGAACCTCTTCA4326836AGAGGCAGAGAGAAACAGCAGTACTTTTAGCAACACCCAATTAAGCTACT
Borostomias antarcticus genome assembly, chromosome: 11.
OX465214.1:1129217-1129236
AAGAGCATGCTGGGAAGACGAACTTGGCTC1129217AGAGGCAGAGAGAAACAGCACGGCGACAGGAAATAATGAGCAGGCAAAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_5427.
FX658511.1:1546-1565
AACCCTGAAAGTTCCATCATTACGCTCAGC1546AGAGGCAGAGAGAAACAGCAGGAACGAGACAATGAGTGACACAGCAACCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8362.
FX764456.1:375-394
AACCCTGAAAGTTCCATCATTACGCTCAGC375AGAGGCAGAGAGAAACAGCAGGAACGAGACAATGAGTGACACAGCAACCG
Macropus eugenii DNA, BAC clone: MEB1-040F08_F, 5'end.
DE870563.1:738-757
TTCTGAAAAGAAGCGTCATACAGTAGCTTC738AGAGGCAGAGAGAAACAGCAGCTATGCAAGTGGGATAGAATAGGAGAGAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:3273814-3273833
AACTCTGAAGGTCCCATCATTGCGCTCAGC3273814AGAGGCAGAGAGAAACAGCAGGAACGAGACAATGAGTGACACAGCAACCG
Avena sativa genome assembly, chromosome: 6C.
OU342390.1:557203707-557203726
GGTCCAGCGCCATGAACAGAACGAACTCTC557203707AGAGGCAGAGAGAAACAGCAATGGAGATGGAGGCACAAAGCAGAGAGGGA
Anaspis maculata genome assembly, chromosome: 4.
OX421964.1:54533317-54533336
TGATGAAAAGTAGCCGAAGTCTGAGGTCTA54533317AGAGGCAGAGAGAAACAGCAAATATAGGCTGTCTGATTTCAACATGATTT
Sepia lycidas genome assembly, chromosome: 15.
OZ010585.1:22109480-22109499
TTGGAAAACTTGAAACTCATAGGATTCCAG22109480AGAGGCAGAGAGAAACAGCAAGTGACCTTCCTAACAAGCTTGTGTTTAAT
Sciurus vulgaris genome assembly, chromosome: 1.
LR738611.1:12100843-12100862
TCTGACCTCGGCCCCCCACCAGGCACCTGG12100843TGCTGTTTCTCTCTGCCTCTCGGGCACCCCCCCAACCCGCCACCACCATC
Onychomys torridus genome assembly, chromosome: 14.
LR877201.1:40387426-40387445
TATAGCAGAATGTCACTAGGGTCATTTTAT40387426TGCTGTTTCTCTCTGCCTCTGTCTCTCTCTCTCTCATGTACACAACATTC
Acomys kempi genome assembly, chromosome: 4.
OU015358.1:96715689-96715708
CCCTTCCCTCCTTTCTCTCTTTTGCTCCCA96715689TGCTGTTTCTCTCTGCCTCTGAACAAGGTCTTATTATGTAGTACTGGGAT
Peromyscus eremicus genome assembly, chromosome: 9.
OX460403.1:56584993-56585012
TTCCTCTCCTCAAAACGCAATCCCCACATC56584993TGCTGTTTCTCTCTGCCTCTCTTCCTTTCTCTCTCCCACTGTCCTCGGCC
Peromyscus eremicus genome assembly, chromosome: 9.
OX460475.1:56738544-56738563
TTCCTCTCCTCAAAACGCAATCCCCACATC56738544TGCTGTTTCTCTCTGCCTCTCTTCCTTTCTCTCTCCCACTGTCCTCGGCC
Onychomys torridus genome assembly, chromosome: 14.
OX460895.1:40387426-40387445
TATAGCAGAATGTCACTAGGGTCATTTTAT40387426TGCTGTTTCTCTCTGCCTCTGTCTCTCTCTCTCTCATGTACACAACATTC
Sylvilagus floridanus genome assembly, chromosome: 9.
OX463231.1:61345919-61345938
TGAGGAGTGATTCAGTAGATACACCGTTTC61345919TGCTGTTTCTCTCTGCCTCTCAAATAAATTTTTTTCTTGTTAAAAGAAGA
Sylvilagus floridanus genome assembly, chromosome: 15.
OX463237.1:11632885-11632904
AAGGGCAGGAAAGACACTCAGGACTCCCGC11632885TGCTGTTTCTCTCTGCCTCTCTGACCCAGGCTGTGTTGGGAGTGACACAG
Pipistrellus pygmaeus genome assembly, chromosome: 18.
OX465320.1:14309582-14309601
CAGGAGGCAACCAATCCATGTGAAACATAT14309582TGCTGTTTCTCTCTGCCTCTCCCTCTCCCTCCCACTCTCTCTAAAAATCA
Martes martes genome assembly, chromosome: X.
OY734072.1:89126940-89126959
CCCTCTTCCCCACCAGGGCTTGTGCTCTCG89126940TGCTGTTTCTCTCTGCCTCTCTTTCTCTCAAATAAATAAATAAAATCTTA
Vespertilio murinus genome assembly, chromosome: 5.
OZ004708.1:36007834-36007853
AGGAAACCAATTGATGTGTCTCTCTCACAT36007834TGCTGTTTCTCTCTGCCTCTCCTTTCCTTTCTACTCTCTCTAAAAAAATA
Somateria mollissima genome assembly, chromosome: 1.
OX598302.1:133613813-133613832
CAGAGGACTACATAAAAACATGAGTTATTC133613813TGCTGTTTCTCTCTGCCTCTGCAAACATGCTGTATCACACCTGCCACTTC
Somateria mollissima genome assembly, chromosome: 1.
OX598690.1:135640634-135640653
CAGAGGACTACATAAAAACATGAGTTATTC135640634TGCTGTTTCTCTCTGCCTCTGCAAACATGCTGTATCACACCTGCCACTTC
Nesoenas mayeri genome assembly, chromosome: 13.
OY720069.1:17002035-17002054
AGTAGCTTAATTGGGTGTTGCTAAAAGTAC17002035TGCTGTTTCTCTCTGCCTCTTGAAGAGGTTCCTAACAGCCAGGGTATATT
Conger conger genome assembly, chromosome: 10.
OY741323.1:23483957-23483976
TTTGAATGGGCGTCCGGCCATATTCTCTGC23483957TGCTGTTTCTCTCTGCCTCTTTGGCTGAACACGGCAGTGATTGTCAAGAG
Chroicocephalus ridibundus genome assembly, chromosome: 1.
OZ001733.1:138138457-138138476
CACAAGACTACATCAAAACATGAGTTATTC138138457TGCTGTTTCTCTCTGCCTCTGCACACACACTGACTCACGCTGAATACCCC
Anas acuta genome assembly, chromosome: 1.
OZ009962.1:135134691-135134710
CAGAGGACTACATAAAAACATGAGTTATTC135134691TGCTGTTTCTCTCTGCCTCTGCAAACATGCTGTACCACACCTGCCACTTC
Larus fuscus genome assembly, chromosome: 1.
OZ010753.1:137284960-137284979
CACAGGACTACATCAAAACTTGAGTTATTC137284960TGCTGTTTCTCTCTGCCTCTGCACACACACCGACTCACGCTGAATACCCC
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a006J07_T7.
AM389223.1:68-87
CGGTTGCTGTGTCACTCATTGTCTCGTTCC68TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN15.001D09F011205 BN15 Brassica napus cDNA clone BN15001D09, mRNA sequence.
CD812988.1:80-99
CGGTTGCTCTGTCACTCATTGTCTCGTTCC80TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN15.019G03F020121 BN15 Brassica napus cDNA clone BN15019G03, mRNA sequence.
CD813368.1:80-99
CGGTTGCTCTGTCACTCATTGTCTCGTTCC80TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN15.021H11F020212 BN15 Brassica napus cDNA clone BN15021H11, mRNA sequence.
CD813933.1:81-100
CGGTTGCTCTGTCACTCATTGTCTCGTTCC81TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.059G23F011128 BN25 Brassica napus cDNA clone BN25059G23, mRNA sequence.
CD825002.1:88-107
CGGTTGCTCTGTCACTCATTGTCTCGTTCC88TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.061G08F011129 BN25 Brassica napus cDNA clone BN25061G08, mRNA sequence.
CD825650.1:91-110
CGGTTGCTCTGTCACTCATTGTCTCGTTCC91TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.061K22F011129 BN25 Brassica napus cDNA clone BN25061K22, mRNA sequence.
CD825742.1:91-110
CGGTTGCTCTGTCACTCATTGTCTCGTTCC91TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.064G23F020416 BN25 Brassica napus cDNA clone BN25064G23, mRNA sequence.
CD826601.1:81-100
CGGTTGCTCTGTCACTCATTGTCTCGTTCC81TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.065A04F020128 BN25 Brassica napus cDNA clone BN25065A04, mRNA sequence.
CD826784.1:90-109
CGGTTGCTCTGTCACTCATTGTCTCGTTCC90TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.071H23F020326 BN25 Brassica napus cDNA clone BN25071H23, mRNA sequence.
CD828666.1:81-100
CGGTTGCTCTGTCACTCATTGTCTCGTTCC81TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
BN25.071M23F020325 BN25 Brassica napus cDNA clone BN25071M23, mRNA sequence.
CD828765.1:81-100
CGGTTGCTCTGTCACTCATTGTCTCGTTCC81TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
TSA: Eriocheir sinensis Unigene86711_JingChaoZuZhi2 mRNA sequence.
JR768695.1:323-342
TTTCAGTTACTCATCTGCAGCTACAGGAAC323TGCTGTTTCTCTCTGCCTCTGCATTAGGTACTAGGGCAGTGGAAGCTGGT
TSA: Eriocheir sinensis Unigene67309_All.Ersiasgt mRNA sequence.
KA721934.1:323-342
TTTCAGTTACTCATCTGCAGCTACAGGAAC323TGCTGTTTCTCTCTGCCTCTGCATTAGGTACTAGGGCAGTGGAAGCTGGT
BONBB23TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONBB23, genomic survey sequence.
BZ443205.1:326-345
CGGTTGCTGTGTCACTCATTGTCTCGTTCC326TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:38461469-38461488
CGGTTGCTCTGTCACTCATTGTCTCGTTCC38461469TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:47835188-47835207
CGGTTGCTCTGTCACTCATTGTCTCGTTCC47835188TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
Brassica napus aspartic protease gene, complete cds.
U55032.1:2122-2141
CGGTTGCTCTGTCACTCATTGTCTCGTTCC2122TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT
B.oleracea mRNA for aspartic protease.
X80067.1:64-83
CGGTTGCTGTGTCACTCATTGTCTCGTTCC64TGCTGTTTCTCTCTGCCTCTGCTGAGCGCAATGATGGGACCTTCAGAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGGCAGAGAGAAACAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGGCAGAGAGAAACAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGGCAGAGAGAAACAGCA&k=0&no_gap=0&offset=0&limit=50
0.526 | 0.369 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTGTTTCTCTCTGCCTCT&k=0&no_gap=0&offset=0&limit=11
0.549 | 0.023 | cgi_end;

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