GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:20:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Martes martes genome assembly, chromosome: 1.
OY734063.1:196774777-196774796
TCCCTTCAGGTGGTCTCCGCAGACCCAAGA196774777AGCAGAGGAGTCTCCACCAAGTCAGAGCTCATGCTGATAACTGGGTTTCC
Trifolium repens mRNA, clone: WCC01j18_086, unspecified EST.
FY454863.1:274-293
GAACTAATTAAAAGCGTTCCCTGTTCTTGA274AGCAGAGGAGTCTCCACCAAAATCCATAAACCTCATAAGTTGTTGAAAAT
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:15285651-15285670
GAACTAATTAAAAGCGTTCCCTGTTCTTGA15285651AGCAGAGGAGTCTCCACCAAAATCCATAAACCTCATAAGTTGTTGAAAAT
Trifolium repens mRNA, clone: WCC01j18_5, unspecified EST.
FY454864.1:676-695
ATTTTCAACAACTTATGAGGTTTATGGATT676TTGGTGGAGACTCCTCTGCTTCAAGAACAGGGAACGCTTTTAATTAGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCAGAGGAGTCTCCACCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAGAGGAGTCTCCACCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.175 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAGAGGAGTCTCCACCAA&k=0&no_gap=0&offset=0&limit=50
0.268 | 0.085 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGTGGAGACTCCTCTGCT&k=0&no_gap=0&offset=0&limit=47
0.269 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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