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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:08:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Raja brachyura genome assembly, chromosome: 4.
OY740784.1:58974524-58974543
CTCCCTGTTACTGCATGGGTTACCTCCGGG58974524AGCTACAGTTTCATCCCACATTCCAAAAACATGCATGTTGACAGGTTAAT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a012P01_SP6.
AM386823.1:532-551
NCGGCCAAGGCCATGCTCCGGCTTNNNTCC532AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCT
HC2694 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
CA992500.1:596-615
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC596AGCTACAGTTTCATCCCACATCTT
2-F02 suppression subtractive hybridization library of dominant genic male sterile (DGMS) Brassica napus Brassica napus cDNA, mRNA sequence.
EE392327.1:208-227
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC208AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
BNZB_UP_115_A05_23AUG2004_047 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE564956.1:583-602
GCGGCCAAGGGCATGCTCCGGCTTAGGTCC583AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
OL1023F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1023, mRNA sequence.
EH413841.1:350-369
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC350AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL1252F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1252, mRNA sequence.
EH414021.1:430-449
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC430AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL1236F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1236, mRNA sequence.
EH414311.1:502-521
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC502AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL1468F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1468, mRNA sequence.
EH414683.1:462-481
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC462AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL1789F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1789, mRNA sequence.
EH415317.1:466-485
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC466AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTT
OL3206F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3206, mRNA sequence.
EH418176.1:482-501
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC482AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL3567F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3567, mRNA sequence.
EH418899.1:505-524
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC505AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL3606F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3606, mRNA sequence.
EH418965.1:508-527
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC508AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL3870F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3870, mRNA sequence.
EH419333.1:486-505
GCAGCCAAGGACATGCTCCGGCTTAGGTCC486AGCTACAGTTTCATCCCACAACCTGTTTTTCTTTTCCTTTTCTTTTGGTG
OL4214F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL4214, mRNA sequence.
EH419972.1:505-524
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC505AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL4710F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL4710, mRNA sequence.
EH420952.1:456-475
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC456AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL5048F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5048, mRNA sequence.
EH421591.1:518-537
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC518AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTC
OL5063F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5063, mRNA sequence.
EH421624.1:508-527
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC508AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL5392F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5392, mRNA sequence.
EH422213.1:481-500
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC481AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL548F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL548, mRNA sequence.
EH422409.1:268-287
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC268AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL6195F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6195, mRNA sequence.
EH423804.1:479-498
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC479AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL6549F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6549, mRNA sequence.
EH424487.1:502-521
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC502AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL7853F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7853, mRNA sequence.
EH426835.1:507-526
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC507AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTT
OL8375F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8375, mRNA sequence.
EH427927.1:469-488
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC469AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL8779R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8779, mRNA sequence.
EH428741.1:532-551
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC532AGCTACAGTTTCATCCCACATCTTGTTTTTCTTACTAGTTCTAGATCGCG
OL9250F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9250, mRNA sequence.
EH429686.1:507-526
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC507AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL9266F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9266, mRNA sequence.
EH429712.1:476-495
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC476AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL9364F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9364, mRNA sequence.
EH429881.1:483-502
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC483AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
OL9579F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9579, mRNA sequence.
EH430321.1:508-527
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC508AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTC
OL9821F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9821, mRNA sequence.
EH430795.1:488-507
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC488AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCC
OL9965F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9965, mRNA sequence.
EH431063.1:476-495
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC476AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
BNARO4GH_T3_025_D07_24NOV2006_057 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES905022.1:537-556
GCGGCCAAGGCCATGCCCCGGCTTAGGTCC537AGCTACAGTTTCATCCCACATCTTGTTTTTC
BNARO4GH_T3_031_H05_25NOV2006_033 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES905621.1:536-555
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC536AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGGAA
BNSCS1CT_UP_059_F03_25MAR2007_021 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV014617.1:536-555
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC536AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
0109817 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV104505.1:518-537
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC518AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
0110664 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV105352.1:510-529
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC510AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
0110762 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV105450.1:512-531
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC512AGCTACAGTTTCATCCCACATCTTGTTTTTCTCGGACGCGTGGGTCGACC
0112119 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV106807.1:522-541
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC522AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCCGGACGCG
0209490 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV143557.1:530-549
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC530AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTCGGACGC
0210142 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV144208.1:533-552
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC533AGCTACAGTTTCATCCCACATCTTGTGTTTCTTTTCCTTTTCTTTTGTTG
0210939 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV145005.1:527-546
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC527AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
0142087 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV152165.1:516-535
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC516AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
0083843 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV159981.1:573-592
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC573AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTCGTGCCGAATTC
0084370 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160508.1:608-627
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC608AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTCGTGCCGAATTC
0084673 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160811.1:578-597
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC578AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTCTCGTGCCGAAT
0157699 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV183537.1:525-544
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC525AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
0189193 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV215882.1:524-543
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC524AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTCCTCGT
RR4AR14JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV572716.1:528-547
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC528AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTGTTGATTAGTAGTGA
RS1AD03JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW719683.1:759-778
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC759AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTGTTGATTAGTAGTGA
RS2A757JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW727960.1:619-638
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC619AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTGTTGATTAGTAGTGA
BR104047 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-04C10 3', mRNA sequence.
EX120217.1:554-573
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC554AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTCCTCGTGCCGA
TSA: Raphanus sativus RS21198 mRNA sequence.
JT805745.1:534-553
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC534AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTGTTGATTAGTAGTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047H21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232488.1:53188-53207
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC53188AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:8268616-8268635
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC8268616AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:8261303-8261322
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC8261303AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:11150342-11150361
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC11150342AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
Brassica rapa genome, scaffold: A03.
LR031572.1:8278958-8278977
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC8278958AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:11154736-11154755
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC11154736AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTCCTTTTCTTTTGTTG
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:9491127-9491146
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC9491127AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTGTTGATTAGTAGTGA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:8373157-8373176
GCGGCCAAGGCCATGCTCCGGCTTAGGTCC8373157AGCTACAGTTTCATCCCACATCTTGTTTTTCTTTTTCTTTTGTTTATTAG
Euplexia lucipara genome assembly, chromosome: 14.
OV179156.1:1477609-1477628
GCAGGAACCAATCTCCTGAGGACCCCTGGA1477609AGCTACAGTTTCATCCCACACATACATGGTTACTTCATCATTATTAGCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCTACAGTTTCATCCCACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTACAGTTTCATCCCACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
2.707 | 2.698 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTACAGTTTCATCCCACA&k=0&no_gap=0&offset=0&limit=50
2.781 | 0.074 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGGGATGAAACTGTAGCT&k=0&no_gap=0&offset=0&limit=0
2.781 | 0.000 | cgi_end;

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