GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-05 20:31:08, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2C275JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900107.1:463-484
AGGAGGACCGGCTCGTAGATCTTGTATCGG463AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGCTTGATGAGACCG
RR2H389JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD969283.1:458-479
AGGAGGACCGGCTCGTAGATCTTGTACCGG458AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
RR2H589JQB RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD969430.1:479-500
AGGAGGACCGGCTCGTAGATCTTGTACCGG479AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
RR3GZ86JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD977139.1:453-474
AGGAGGACCGGCTCGTAGATCTTGTATCGG453AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
RR4H249JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD985450.1:463-484
AGGAGGACCGGCTCGTAGATCTTGTACCGG463AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
Raphanus sativus mRNA, clone: RSCR06I14, 5' end sequence.
FY441657.1:446-467
AGGAGGACCGGCTCGTAGATCTTGTACCGG446AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
Raphanus sativus mRNA, clone: RSCR14F21, 5' end sequence.
FY444133.1:394-415
AGGAGGACCGGCTCGTAGATCTTGTACCGG394AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3612.
FX676153.1:465-486
AGGAGGACCGGCTCGTAGATCTTGTATCGG465AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATGAGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1692.
FX769732.1:508-529
AGGAGGACCGGCTCGTAGATCTTGTATCGG508AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATCAGAC
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:3735513-3735534
AGGAGGACCGGCTCGTAGATCTTGTATCGG3735513AGGATATCAGGCTGGAAGAGCTCGATCGGGGCACCGTTGAGCTTGATCAGAC
Mustela lutreola genome assembly, chromosome: 14.
OZ182611.1:22701734-22701755
ACTTCTGAATTTGGGGACTGCTGTCTGGGG22701734AGCTCTTCCAGCCTGATATCCTACCCTGTGGATTTTGGATTTGCCAAGCCTC
RR4BV74TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770781.1:161-182
GTCTCATCAAGCTCAACGGTGCCCCGATCT161AGCTCTTCCAGCCTGATATCCTCCGGTACGAGATCTACGAGCCGGTCCTCCT
RS1BH84TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX886413.1:162-183
GTCTCATCAAGCTCAACGGTGCCCCGATCG162AGCTCTTCCAGCCTGATATCCTCCGATACAAGATCTACGAGCCGGTCCTCCT
RS2C275TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896133.1:159-180
CGGTCTCATCAAGCAACGGTGCCCCGATCG159AGCTCTTCCAGCCTGATATCCTCCGATACAAGATCTACGAGCCGGTCCTCCT
RR3DE67TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY914116.1:161-182
GTCTCATCAAGCTCAACGGTGCCCCGACCG161AGCTCTTCCAGCCTGATATCCTCCGATACAAGATCTACGAGCCGGTCCTCCT
RR1FV55TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD536549.1:162-183
GTCTCATCAAGCTCAACGGTGCCCTGATCG162AGCTCTTCCAGCCTGATATCCTCCGGTACAAGATCTACGAGCCGGTCCTCCT
RS3EG06TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD576566.1:69-90
GTCTCATCAAGCTCAACGGTGCCCCGATCG69AGCTCTTCCAGCCTGATATCCTCCGGTACAAGATCTACGAGCCGGTCCTCCT
RR2H389TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD973632.1:161-182
GTCTCATCAAGCTCAACGGTGCCCCGATCG161AGCTCTTCCAGCCTGATATCCTCCGGTACAAGATCTACGAGCCGGTCCTCCT
RR2H589TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD973808.1:161-182
GTCTCATCAAGCTCAACGGTGCCCCGATCG161AGCTCTTCCAGCCTGATATCCTCCGGTACAAGATCTACGAGCCGGTCCTCCT
RR4H249TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD989696.1:161-182
GTCTCATCAAGCTCAACGGTGCCCCGATCG161AGCTCTTCCAGCCTGATATCCTCCGGTACAAGATCTACGAGCCGGTCCTCCT
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:31786767-31786788
GTCTGATCAAGCTCAACGGTGCCCCGATCG31786767AGCTCTTCCAGCCTGATATCCTCCGATACAAGATCTACGAGCCGGTCCTCCT
Brassica nigra genome assembly, chromosome: 2.
OZ173172.1:36066410-36066431
GTCTAATCAAGCTCAACGGTGCCCCGATCG36066410AGCTCTTCCAGCCTGATATCCTCCGATACAAGATCTTCGAGCCGGTCCTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGATATCAGGCTGGAAGAGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGATATCAGGCTGGAAGAGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.418 | 1.409 | search_plus_done; http://172.18.8.135:50800/match?q=AGGATATCAGGCTGGAAGAGCT&k=0&no_gap=0&offset=0&limit=50
2.831 | 1.413 | search_minus_done; http://172.18.8.135:50800/match?q=AGCTCTTCCAGCCTGATATCCT&k=0&no_gap=0&offset=0&limit=40
2.840 | 0.008 | cgi_end;

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