GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Rattus norvegicus 1 BAC CH230-148J18 (Children's Hospital Oakland Research Institute) complete sequence.
AC106606.5:44632-44649

CTTCTTTAAACAACTGCTTCCATGAGATTA44632AGGCTTGGAAATGATGCTGCTGTGTTTTGAGGACACACTCTGATAGCT

Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:98114127-98114144

CCCATCATGGAAGATTAAAATTTAGTCAGG98114127AGGCTTGGAAATGATGCTAGTAGTAAAACTGATTTATTAAAGAAAAAA

Sciurus vulgaris genome assembly, chromosome: 10.
LR738620.1:19822919-19822936

AAACATGGTTAAGACAAAAGAAAAAGATCA19822919AGGCTTGGAAATGATGCTAACCACTCAGAGTTAGTTTAGAATCTGAAG

Onychomys arenicola genome assembly, chromosome: 4.
OX460350.1:43604137-43604154

GGGTGAATCATCTAATCTCGCCACTGCTAC43604137AGGCTTGGAAATGATGCTTTTAAAGAAAAACGTGAGTCTTCTCTGTTT

Onychomys arenicola genome assembly, chromosome: 4.
OX460445.1:43006385-43006402

GGGTGAATCATCTAATCTCGCCACTGCTAC43006385AGGCTTGGAAATGATGCTTTTAAAGAAAAACGTGAGTCTTCTCTGTTT

Somateria mollissima genome assembly, chromosome: 3.
OX598304.1:48721266-48721283

ACACACAATGCAACATGCCCAAAAGGCACG48721266AGGCTTGGAAATGATGCTGAGGATCTTTTCCAGAAGTGAAATGTTCTC

Somateria mollissima genome assembly, chromosome: 3.
OX598692.1:48766669-48766686

ACACACAATGCAACATGCCCAAAAGGCACG48766669AGGCTTGGAAATGATGCTGAGGATCTTTTCCAGAAGTGAAATGTTCTC

Mobula hypostoma genome assembly, chromosome: 11.
OY992602.1:101206449-101206466

TATAAACCATTTGAGCGCCCCGTGGAGGGG101206449AGGCTTGGAAATGATGCTTTTTTGGCCTTAAGCTGCGAATTTCTGCTG

s13dLA03C01RT002_521997 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG089701.1:332-349

TACCCAGTGAGTCATGGAACACATGCTGTG332AGGCTTGGAAATGATGCTTCAATCTCCCAAACCATCAAGGTCAAACCT

s13dLA58B12RT047_528569 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG092899.1:337-354

TACCCAGTGAGTCATGGAACACATGCTGTG337AGGCTTGGAAATGATGCTTCAATCTCCCAAACCATCAAGGTCAAACCT

Trifolium repens mRNA, clone: WCC26d14_026, unspecified EST.
FY463178.1:302-319

TTCCCAGTGTCTCATGGAATACATGCTATC302AGGCTTGGAAATGATGCTACAATTTCTCAAACAATTAAGGTCAAACCT

Rattus norvegicus clone CH230-486H11, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC119371.6:149703-149720

CTTCTTTAAACAACTGCTTCCATGAGATTA149703AGGCTTGGAAATGATGCTGCTGTGTTTTGAGGACACACTCTGATAGCT

Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-39J4.
CU929643.2:101673-101690

TGCTTTTCTCACCTTCCCAGGTGAGGAGTC101673AGGCTTGGAAATGATGCTCAATTCCTGCAGTAATGCAGCTAATAGAGC

Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:3728366-3728383

TTCCCAGTGTCTCATGGAATACATGCTATC3728366AGGCTTGGAAATGATGCTACAATTTCTCAAACAATTAAGGTCAAACCC

Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:3573667-3573684

TTCCCAGTGTCTCATGGAATACATGCTATC3573667AGGCTTGGAAATGATGCTTCAATTTCTCAAACAATTAAGGTCAAACCT

Porpolomopsis calyptriformis genome assembly, chromosome: 8.
OX621170.1:1125360-1125377

TGAATCGATCATCGCATCTAAGCCTGAGTT1125360AGGCTTGGAAATGATGCTCGATAAACGAGCTGTTAGGAGATGATTTCT

Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:3679367-3679384

TTCCCAGTGTCTCATGGAATACATGCTATT3679367AGGCTTGGAAATGATGCTACAATTTCTCAAACAATTAAGGTCAAACCT

Portevinia maculata genome assembly, chromosome: X.
OX454529.1:2849357-2849374

TGTTTTTCCACATTCGGCTGATGGCCGGGA2849357AGGCTTGGAAATGATGCTGCATCCGATTGCCCAGGAACATTTTACTGC

Sepioteuthis lessoniana genome assembly, chromosome: 23.
OY757926.1:35918409-35918426

TGTAATTGGCGCACTTGTAACAGTCCCCAA35918409AGGCTTGGAAATGATGCTGAAAGATTTCGAAATCGGAAGACGAACCGA

Sepia lycidas genome assembly, chromosome: 41.
OZ010611.1:35850323-35850340

TAACAACAAAGACAACTTTAATTTATAAAA35850323AGGCTTGGAAATGATGCTTAAATATAGATATAACCTGCTAAACCTAAG

Sciurus carolinensis genome assembly, chromosome: 9.
LR738598.1:122351089-122351106

CTTCAGATTTTAAACTAACTCTGAGTGCTT122351089AGCATCATTTCCAAGCCTTGATCTTTTCTTTTGTCTTAACCATGTTTT

Muscardinus avellanarius genome assembly, chromosome: 2.
OY726558.1:155503523-155503540

CACTTGACTATTAATATTTTGGCCACTGGT155503523AGCATCATTTCCAAGCCTTTTTCTCAATCTCTTCTCTCTCCAAGTGAT

Micromys minutus genome assembly, chromosome: 2.
OZ004782.1:97397622-97397639

TGACTCATGAGCCCAACACTGAAAATAGAG97397622AGCATCATTTCCAAGCCTAGGAAGACCTTGCACTTCCTCAAATCACCT

Felis catus Senzu DNA, chromosome: E2, American Shorthair breed.
AP023166.1:59061390-59061407

TGCTACTGTATAGGTTCGTGTGGCTCAAAG59061390AGCATCATTTCCAAGCCTCGCCGTGCCCCACACCGACTTGCACCCGTG

Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:100623048-100623065

GCTCTATTAGCTGCATTACTGCAGGAATTG100623048AGCATCATTTCCAAGCCTGACTCCTCACCTGGGAAGGTGAGAAAAGCA

Sylvilagus floridanus genome assembly, chromosome: 12.
OX463234.1:42427633-42427650

TAACCTGACGTCTGGAATACTTAATGTGTC42427633AGCATCATTTCCAAGCCTGTCAAGTGTTATCTCATTTCACCTATGCGT

Sus scrofa genome assembly, chromosome: 6.
OY997213.1:102768478-102768495

GCTCTATTAGCTGCATTACTGCAGGAATTG102768478AGCATCATTTCCAAGCCTGACTCCTCACCTGGGAAGGTGAGAAAAGCA

Salmo trutta genome assembly, chromosome: 31.
LR584423.1:39979364-39979381

ACGTGGCTCAACGTTGTAGCGTGGATTAAC39979364AGCATCATTTCCAAGCCTTTTTTTTTTTTTTCTAACTGTTTCTTCTTC

Argentina silus genome assembly, chromosome: 12.
OX637379.1:3087727-3087744

TGGCGTAAGCCGAGAGTCATTTTGTAACCA3087727AGCATCATTTCCAAGCCTCAGTGCTGTGTCACCAGTTACAGTGGTGCC

Nesoenas mayeri genome assembly, chromosome: 4.
OY720059.1:25647496-25647513

ACATCCACACCACTAGAACAGTCCAACATC25647496AGCATCATTTCCAAGCCTTGCAATAGAAATTTCATTTATTAACCTCAC

Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:187011801-187011818

ACTTTATCCTGTCAATTCTTTTTTATCAAA187011801AGCATCATTTCCAAGCCTCCCAGAGTATTTAATGTTCTTTAATGGTAC

Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:52053673-52053690

AGGTTTGACCTTAATTGTTTGAGAAATTGA52053673AGCATCATTTCCAAGCCTGATAGCATGTATTCCATGAGACACTGGGAA

Euphorbia lathyris genome assembly, chromosome: 6.
OY755225.1:27232512-27232529

TATGGACTAAGCAACCTATGTAAGAACAAA27232512AGCATCATTTCCAAGCCTAATTGCGTCAGTCTGTGACACCAATATCAA

Erannis defoliaria genome assembly, chromosome: 1.
FR990066.1:9296463-9296480

GCTCGAAGCGAGTTGGAACTCTCTACTTGC9296463AGCATCATTTCCAAGCCTATGCCATTTGGGAATATTCAAACGAAAAGA

Parasteatoda lunata genome assembly, chromosome: X1.
OX421980.1:835990-836007

AAATATAGAAGTAAAATTAGTTAATTATAG835990AGCATCATTTCCAAGCCTTCAAATAACATATACAACGTGTCGCACCTA

Hypomecis punctinalis genome assembly, chromosome: 18.
OX438812.1:20922622-20922639

AGTGTGCGCAGGAAACGTAAACGTTTACTA20922622AGCATCATTTCCAAGCCTAGGCATAGATAACAGCGCAGGCTGCGCAGG

Hypomecis punctinalis genome assembly, chromosome: 18.
OX438812.1:20926123-20926140

AGTGTGCGCAGGAAACGTAAACGTTTACTA20926123AGCATCATTTCCAAGCCTAGGCATAGATAACAGCGCAGGCTGCGCAGG

Hypomecis punctinalis genome assembly, chromosome: 18.
OX438812.1:20929624-20929641

AGTGTGCGCAGGAAACGTAAACGTTTACTA20929624AGCATCATTTCCAAGCCTAGGCATAGATAACAGCGCAGGCTGCGCAGG

Tipula vernalis genome assembly, chromosome: 3.
OY282560.1:262775694-262775711

AACACTGCGTATTTTTTGAGTTATTGCTCT262775694AGCATCATTTCCAAGCCTAAACTCACACAACAAATAACTAACAATTTT

Axinella damicornis genome assembly, chromosome: 11.
OZ007515.1:5445447-5445464

TCATGTTCATGGTCATACTGGGAGCAAGGT5445447AGCATCATTTCCAAGCCTTCCAATACATAGCTAGTACCTTTGAGTTAT

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Debug Info:

0.009 | 0.009 | search_start;
0.301 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCTTGGAAATGATGCT&k=0&no_gap=0&offset=0&limit=50
0.369 | 0.068 | search_minus_done; http://172.18.8.135:50400/match?q=AGCATCATTTCCAAGCCT&k=0&no_gap=0&offset=0&limit=30
0.382 | 0.014 | cgi_end;

Summary:

Results:

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