GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:45:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense cDNA clone:RCE13829.
BB914296.1:294-313
GGGCTGCTATCGGGATGCTAATTATTATAG294AGGTTCTTTGTGTTGTCGGGTAATTTTATTTGTCATCTGGCTTCCTTTAT
Trifolium repens mRNA, clone: WCC15m18_087, unspecified EST.
FY459476.1:262-281
GGGCTGCTATCGGGATGCTAATTATTATAG262AGGTTCTTTGTGTTGTCGGGTAATTTTATTTGTCATCTGGCTTCCTTCTT
Trifolium repens mRNA, clone: WCC25j09_038, unspecified EST.
FY462947.1:287-306
GGGCTGCTATCGGGATGCTAATTATCATAG287AGGTTCTTTGTGTTGTCGGGTAATTTTATTTGTCATCTGGCTTCCTTCTT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:58954541-58954560
TGCTAAGTCATGCTCTGATTAAATTGTTGC58954541AGGTTCTTTGTGTTGTCGGGTAATTTTATTTGTCATCTGGCTTCCTTCTT
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:7131876-7131895
AAGAAGGCAGCCAGATGACAAATAAAATTA7131876CCCGACAACACAAAGAACCTGCAACAATTTAATCAGAGTCTGACTTAGCA
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:8147833-8147852
AAGAAGGAAGCCAGATGACAAATAAAATTA8147833CCCGACAACACAAAGAACCTGCAACAATTTAATCACAGACTGACTTAGCA
Thecophora atra genome assembly, chromosome: 1.
OW569397.1:3838784-3838803
TACGACTTGTTACATCATAACTAACAGTTT3838784CCCGACAACACAAAGAACCTGCCAGGGCCAAGTGAGATCCCAAGAGGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGTTCTTTGTGTTGTCGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGTTCTTTGTGTTGTCGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.270 | 0.262 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTTCTTTGTGTTGTCGGG&k=0&no_gap=0&offset=0&limit=50
0.287 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=CCCGACAACACAAAGAACCT&k=0&no_gap=0&offset=0&limit=46
0.289 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).