GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 14:38:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypioides kirkii chromosome KI_01.
CP032244.1:4600449-4600468
CAAACTCAAACACCAACATCATATGATATA4600449AGTCCTTTGAAGCCAATGATATAACCTTACACAGTTCTTTCTTTTTTGTT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:5644325-5644344
CAAACCCAAACACCAACATCATATGATATA5644325AGTCCTTTGAAGCCAATGATATAAACTTGCGCACTTCTTTCTTTTTCCTT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:7361606-7361625
CAAACCCAAACACCAACATCATATGATATA7361606AGTCCTTTGAAGCCAATGATATAATCTTACACACTTCTTTCTTTTTCCTT
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:7564679-7564698
CAAACCCAAACACCAACATCATATGATATA7564679AGTCCTTTGAAGCCAATGATATAAACTTACGCACTTCTTTCTTTTTCCTT
Lathyrus sativus genome assembly, chromosome: 5.
OZ012739.1:292934310-292934329
CACTCCCCAAAAGGAAAGAAAAACATATTC292934310AGTCCTTTGAAGCCAATGATTACTTTAATAACATTACAAAGGCAGGATGC
Sequence 15861 from patent US 8030546.
GY468086.1:1-20
1ATCATTGGCTTCAAAGGACTTATATCATATGATGTTGGTGTTTGGGTTTG
Sequence 15861 from patent US 10597667.
MO979239.1:1-20
1ATCATTGGCTTCAAAGGACTTATATCATATGATGTTGGTGTTTGGGTTTG
EST1070635 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559995.1:1-20
1ATCATTGGCTTCAAAGGACTTATATCATATGATGTTGGTGTTTGGGTTTG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:118286443-118286462
AAGGAAAAAGAAAGAAGTGTGTAAGATTAT118286443ATCATTGGCTTCAAAGGACTTATATCATATGATGTTGGTGTTTGGGTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTCCTTTGAAGCCAATGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTCCTTTGAAGCCAATGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCCTTTGAAGCCAATGAT&k=0&no_gap=0&offset=0&limit=50
0.244 | 0.145 | search_minus_done; http://172.18.8.135:50400/match?q=ATCATTGGCTTCAAAGGACT&k=0&no_gap=0&offset=0&limit=45
0.247 | 0.003 | cgi_end;

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