GGGenome | Results

2025-04-17 07:47:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

001117KADA001042HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clone KADAA00104, mRNA sequence.
FG440039.1:108-134

AATGCTTGCTGCTGCCCAATACATTGAGGG108AGATGGTAGCCCTGGAAGTATCCGACTTTTCAAACTTGGTCCTGCCGTAAGCAGCTA

001205KADA003191HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clone KADAA00319, mRNA sequence.
FG443436.1:113-139

AATGCTTGCTGCTGCCCAATACATTGAGGG113AGATGGTAGCCCTGGAAGTATCCGACTTTTCAAACTTGGTCCTGCCGTAAGCAGCT

020304KAMA003936HT (KAMA) Actinidia hemsleyana roots with nematodes Actinidia hemsleyana cDNA clone KAMAA00393, mRNA sequence.
FG463101.1:151-177

AATGCTTGCTGCTGCCCAATACATTGAGGG151AGATGGTAGCCCTGGAAGTATCCGACTTTTCAAGCTTGGTCCTGCCGTGAGCGGCTA

020313KAMA005699HT (KAMA) Actinidia hemsleyana roots with nematodes Actinidia hemsleyana cDNA clone KAMAA00569, mRNA sequence.
FG465440.1:151-177

AATGCTTGCTGCTGCCCAATACATTGAGGG151AGATGGTAGCCCTGGAAGTATCCGACTTTTCAAGCTTGGTCCTGCCGTGAGCGGCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCGGATACTTCCAGGGCTACCATCT&k=0&no_gap=0&offset=0&limit=50
0.372 | 0.268 | search_minus_done; http://172.18.8.135:50400/match?q=AGATGGTAGCCCTGGAAGTATCCGACT&k=0&no_gap=0&offset=0&limit=50
0.375 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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