GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:44:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus chromosome 8, clone RP23-183M15, complete sequence.
AC110519.13:138245-138263
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA138245AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971571.1:109041412-109041430
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109041412AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971582.1:109370419-109370437
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109370419AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971603.1:109556431-109556449
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109556431AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus domesticus genome assembly, chromosome: 8.
OW971629.1:110238554-110238572
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA110238554AGTGCTGATCAAGAAGAAGAAATACAGAGAGTTGGCACATGTTCCATTA
Mus musculus molossinus genome assembly, chromosome: 8.
OW971665.1:117801661-117801679
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA117801661AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971716.1:108383188-108383206
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA108383188AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971729.1:109090288-109090306
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109090288AGTGCTGATCAAGAAGAAGAAATACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971750.1:109370810-109370828
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109370810AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971792.1:109510083-109510101
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109510083AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971812.1:115469391-115469409
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA115469391AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OW971862.1:109469114-109469132
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA109469114AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OX389802.1:122498421-122498439
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA122498421AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OX390152.1:119147592-119147610
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA119147592AGTGCTGATCAAGAAGAAGAAATACAGAGAGTTGGCACATGTTCCATTA
Mus musculus genome assembly, chromosome: 8.
OX439023.1:114478599-114478617
TCATCTCTCAAAAAGAGGAAAGGGGTGAGA114478599AGTGCTGATCAAGAAGAAGAAACACAGAGAGTTGGCACATGTTCCATTA
uncultured Holophaga sp. isolate 19663c38-e6f5-42a8-8268-146037a524bf genome assembly, chromosome: 1.
OY760195.1:2691055-2691073
TAGCTTCATCCTGAAGACGCCCCCAGCCGC2691055AGTGCTGATCAAGAAGAAGATCGGCCTCGACAAGGGCAGCGCGACTCCC
RPCI-24-99F23.TJ RPCI-24 Mus musculus genomic clone RPCI-24-99F23, genomic survey sequence.
AZ729428.1:4-22
CGA4AGTGCTGATCAAGAAGAAGAAACCAGAGAGTTGGCACATGTTCCATTAT
20-L107763-1033-105-G06-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-105-G06 3', genomic survey sequence.
JY332259.1:668-686
AAACCTCAATCACAAGGAGAAAGTGAAGTT668AGTGCTGATCAAGAAGAAGAACACACAAGTGTGTGTGAATTGGATGCAA
94-L113000-1033-266-K23-pIfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-266-K23 5', genomic survey sequence.
JY471652.1:406-424
AAACCTCAATCACAAGGAGAAAGTGAAGTT406AGTGCTGATCAAGAAGAAGAACACACAAGTGTGTGTGAATTGGATGCAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 3.
OX392549.1:8535161-8535179
ATAGAGATGCAACAATATGAAAGTGAAGTT8535161AGTGCTGATCAAGAAGAAGAACACACAAGTGTGTATGAATTGGATGCAA
Bromus sterilis genome assembly, chromosome: 2.
OX465596.1:314586830-314586848
GGCCGTCTTCCATCAAGTCGGATCGAATGA314586830AGTGCTGATCAAGAAGAAGAAAGTTATCAGAGAAGTTAAGTATGAGGAA
Bromus sterilis genome assembly, chromosome: 5.
OX465599.1:203348791-203348809
GGCCGTCTTCCATCAAGTCGGATCGAATGA203348791AGTGCTGATCAAGAAGAAGAAGGTTATCAGAGAAACTAGGTATGGGGAA
Bromus sterilis genome assembly, chromosome: 6.
OX465600.1:261777372-261777390
GGCCGTCTTCCATCAAGTCGGATCGAATGA261777372AGTGCTGATCAAGAAGAAGAAGGTTATCAGAAAAGTCAGGTATAAGGAA
Bromus sterilis genome assembly, chromosome: 6.
OX465600.1:268381272-268381290
GGCCGTCTTCCATCAGATCGGATTGAATGA268381272AGTGCTGATCAAGAAGAAGAAAGTTGTCAGAGAAATTGAGTATGAGGCA
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:19784919-19784937
AAGAAAGGAAAATGAATAGCTTTTGTATCA19784919AGTGCTGATCAAGAAGAAGAATATATTGGATCAGATAAGGATCTCTCAG
Anopheles stephensi strain SDA-500 chromosome X.
CP032231.1:9314254-9314272
TCTGGTCCCGTTTTAAGAATGTGCGCACCA9314254AGTGCTGATCAAGAAGAAGCGCTTTTCTATCCCTCACTCAAGCCACCCT
Macrobrachium nipponense isolate FS-2020 chromosome 5.
CP062057.1:122852239-122852257
ATATTCCAGGGAAGTGAAGTTTCCCATAAA122852239AGTGCTGATCAAGAAGAAGATTTTCCCAAGAAGATGAAGAAGACGACGA
Shargacucullia verbasci genome assembly, chromosome: 12.
OX387292.1:10539061-10539079
AAAAATTTTTTTTGCGTTTCTCCACCAGCA10539061AGTGCTGATCAAGAAGAAGAAGCAAGTATATTTTTCCAGTGATAATAAG
Xanthia icteritia genome assembly, chromosome: 11.
OX421941.2:15047145-15047163
CTGGGAATCGGCCTGGTTAAAGGTAGTTTA15047145AGTGCTGATCAAGAAGAAGAATTGAAGAAAAGTGGTTCAGTTTCTTTGG
Brachyopa scutellaris genome assembly, chromosome: 3.
OX459114.1:53859173-53859191
GAAATCCAACAGTCCTTGGGCTTCACCAAT53859173AGTGCTGATCAAGAAGAAGGATGGTTCTTACAGGTTCTGCGTCGATTTT
Ennomos erosarius genome assembly, chromosome: Z.
OY756977.1:10788076-10788094
AAAGTGATCTCACTGTGATGCTGCTGTCAG10788076AGTGCTGATCAAGAAGAAGTTGTCCTTGCGCTATTTGGTAAGTTGAAGC
Mus musculus BAC clone RP24-318P16 from chromosome 8, complete sequence.
AC121999.3:165448-165466
TAATGGAACATGTGCCAACTCTCTGTGTTT165448CTTCTTCTTGATCAGCACTTCTCACCCCTTTCCTCTTTTTGAGAGATGA
uncultured Holophaga sp. isolate d3ffe575-8416-420f-8396-ff88a8865573 genome assembly, chromosome: 1.
OY782859.1:697916-697934
GGGAGTCGCGCTGCCCTTGTCGAGGCCGAT697916CTTCTTCTTGATCAGCACTGCGGCTGGGGGCGTCTTCAGGATGAAGCTA
TSA: Trachemys scripta elegans comp14614_c0_seq1 mRNA sequence.
JW275198.1:2691-2709
CAGTTCCAAATTTTAATTCTGGATGGGCTT2691CTTCTTCTTGATCAGCACTTTCTATTTCTTCTTCATTGTCATCCTCTAG
TSA: Trachemys scripta elegans comp14614_c0_seq2 mRNA sequence.
JW275199.1:2691-2709
CAGTTCCAAATTTTAATTCTGGATGGGCTT2691CTTCTTCTTGATCAGCACTTTCTATTTCTTCTTCATTGTCATCCTCTAG
TSA: Trachemys scripta elegans comp14614_c0_seq3 mRNA sequence.
JW275200.1:1168-1186
CAGTTCCAAATTTTAATTCTGGATGGGCTT1168CTTCTTCTTGATCAGCACTTTCTATTTCTTCTTCATTGTCATCCTCTAG
TSA: Trachemys scripta elegans comp14614_c0_seq4 mRNA sequence.
JW275201.1:1168-1186
CAGTTCCAAATTTTAATTCTGGATGGGCTT1168CTTCTTCTTGATCAGCACTTTCTATTTCTTCTTCATTGTCATCCTCTAG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:31752902-31752920
TTACATCCAATTCATATGCACTTGTGTGTT31752902CTTCTTCTTGATCAGCACTAACTTAACTTTCTCCTTGTGATTGAGGCTT
Bromus sterilis genome assembly, chromosome: 1.
OX465595.1:215345246-215345264
CCTCATACCTAGTTTCTCTGATAACCTTCG215345246CTTCTTCTTGATCAGCACTTCATTCGATCCGACTTGATGGAAGACGTCC
Bromus sterilis genome assembly, chromosome: 1.
OX465595.1:258035153-258035171
TGCCTCATACTCAATTTCTCTGACAACTTT258035153CTTCTTCTTGATCAGCACTTCATTCAATCCAATCTGATGGAAGATGGCC
Bromus sterilis genome assembly, chromosome: 1.
OX465595.1:422566385-422566403
TTCCTCATACTTGATTTTTCTGCTGACCTT422566385CTTCTTCTTGATCAGCACTTCATTCGATCCGATCTGATGGAAGACGGCC
Bromus sterilis genome assembly, chromosome: 6.
OX465600.1:100349607-100349625
TTCCTCATACTTGACTTCTCTGACAACCTT100349607CTTCTTCTTGATCAGCACTTCCTTCGATCCAACTTGATGGAAGACGGCC
Bromus sterilis genome assembly, chromosome: 7.
OX465601.1:29855216-29855234
TTTCCTCATCTTAACTTCTCTGATGACCTT29855216CTTCTTCTTGATCAGCACTTCATCCGATCCGATCTGATGGAAGACGGCC
Anopheles stephensi strain Indian chromosome X.
CP032298.1:13637108-13637126
GAAGGCGCGTGAGTGAGGGATAGAAAAGCG13637108CTTCTTCTTGATCAGCACTTGGTGCGCACATTCTTAAAACGGGACCAGA
Lasiommata megera genome assembly, chromosome: 13.
OV743320.1:15362205-15362223
CGGACCCTACCGACAAGGCGTGTTACTTTT15362205CTTCTTCTTGATCAGCACTGCAAACGATTCTGATTTTGTTCCATTGTTT
Brachyopa scutellaris genome assembly, chromosome: 1.
OX459112.1:101909609-101909627
AAAATCGACGCAGAACCTATAAGAACCATC101909609CTTCTTCTTGATCAGCACTATTGGTGAAGCCCAAGGACTGTTGGATTTC
Brachyopa scutellaris genome assembly, chromosome: 2.
OX459113.1:64574619-64574637
AAAATCGACGCAGAACCTATGAGAACCATC64574619CTTCTTCTTGATCAGCACTATTGGTGAAGCCCAAGGACTGTTGGATTTC
Brachyopa scutellaris genome assembly, chromosome: 3.
OX459114.1:42775929-42775947
AAAATCGACGCAGAACCTATAAGAACCATC42775929CTTCTTCTTGATCAGCACTATTGGTGAAGCCCAAGGACTGTTGGATTTC
Atherix ibis genome assembly, chromosome: 6.
OY282610.1:29405490-29405508
CTTGGGCGTTGTGAAATTTTTCCTCCTATG29405490CTTCTTCTTGATCAGCACTTGATGGATTTCATCACAAGAAATTTCTTCT
Trididemnum clinides genome assembly, chromosome: 3.
OY776286.1:29843035-29843053
TCTTAATTACAGCACACAGATCACTGGTTC29843035CTTCTTCTTGATCAGCACTTGCCAATTTCTGCGCAACATCACTCGAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTGCTGATCAAGAAGAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTGCTGATCAAGAAGAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=AGTGCTGATCAAGAAGAAG&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTTCTTGATCAGCACT&k=0&no_gap=0&offset=0&limit=19
0.344 | 0.012 | cgi_end;

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