GGGenome | Results

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2025-04-17 11:46:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Ovis canadensis canadensis isolate 43U chromosome 15 sequence.
CP011900.1:46151410-46151428

TCTGTAGGATGTTTTAAAGGGACTTGTCCC46151410AGTGGGGAGACTTCTAGCATGATCTATGACGGGGGAAGCCTCTATGTCT

Apteryx australis mantelli genome assembly, scaffold: scaffold158.
LK065234.1:4237039-4237057

ACCTGTTGCACCCTGTCCTGCTGTGATGCC4237039AGTGGGGAGACTTCTAGCAGTGTCAAGCCAGGTTTTGACTGCTGCTTTG

EG-A11_006_E06 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600053.1:42-60

TCTTCCTTCTTGTTGCCCCTTGTGTTACTC42TGCTAGAAGTCTCCCCACTCCTCTCTCTCTCTACCCTATCAATAAAATG

EoEST2032 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-2165 5' similar to Unknown protein, mRNA sequence.
ES323762.1:4-22

CTC4TGCTAGAAGTCTCCCCACTCCTCTCTCTCTCTCTCTACCCTATCAATAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
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JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=AGTGGGGAGACTTCTAGCA&k=0&no_gap=0&offset=0&limit=50
0.223 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTAGAAGTCTCCCCACT&k=0&no_gap=0&offset=0&limit=48
0.225 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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