GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:58:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig27075, mRNA sequence.
JW077319.1:93-112
ATTTAGGACATAATTAACCTTAAATTAATT93AGTTGCGAGGTAATCCTCCATACCAACCACCTCTAGGATATCCTCCCCAA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:3476138-3476157
ACTTAGTGCATAATTAACCTTAATTTAATT3476138AGTTGCGAGGTAATCCTCCATACCAACCACGTCTAGGATATCCTCCCCAA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:3517353-3517372
ACTTAGTGCATAATTAACCTTAAATTAATT3517353AGTTGCGAGGTAATCCTCCATACCAACCACCTCTAGGATATCCTCCCCAA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:3554529-3554548
ACTTAGTGCATAATTAACCTTAAATTAATT3554529AGTTGCGAGGTAATCCTCCATACCAACCACGTCTAGGATATCCTCCCCAA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:3569482-3569501
ACTTAATACATAATTAACCTTAAATTAATT3569482AGTTGCGAGGTAATCCTCCATACCAACCACGTCTAGGATATCCTCCCCAA
KS20008F01 KS20 Capsicum annuum cDNA, mRNA sequence.
GD094066.1:67-86
TTGGGGAGGATATCCTAGAGGTGGTTGGTA67TGGAGGATTACCTCGCAACTAATTAATTTAAGGTTAATTATGCACTAAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:288773033-288773052
TTGGGGAGGATATCCTAGACGTGGTTGGTA288773033TGGAGGATTACCTCGCAACTAATTAATTTAAGGTTAATTATGCACTAAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:288787944-288787963
TTGGGGAGGATATCCTAGACGTGGTTGGTA288787944TGGAGGATTACCTCGCAACTAATTAATTTAAGGTTAATTATGCACTAAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:288836679-288836698
TTGGGGAGGATATCCTAGACGTGGTTGGTA288836679TGGAGGATTACCTCGCAACTAATTAATTTAAGGTTAATTATGCACTAAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:288878182-288878201
TTGGGGAGGATATCCTAGACGTGGTTGGTA288878182TGGAGGATTACCTCGCAACTAATTAAATTAAGGTTAATTATGCACTAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTTGCGAGGTAATCCTCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTTGCGAGGTAATCCTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=AGTTGCGAGGTAATCCTCCA&k=0&no_gap=0&offset=0&limit=50
0.227 | 0.106 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGGATTACCTCGCAACT&k=0&no_gap=0&offset=0&limit=45
0.230 | 0.003 | cgi_end;

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