GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:51:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:237282396-237282423
AATAGCCAAACATTTTGTTATATCACTTTC237282396ATACCCTCTCATCATTCACAAAATATTTTCCATACTTTCCTCCATAACATTCTTTGTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:241799982-241800009
AATAGCCAAACATTTTGTTATATCACTTTC241799982ATACCCTCTCATCATTCACAAAATATTTTCCATACTTTCCTCCATAACATTCTTTGTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:229633734-229633761
TTAAAATCTATAAATAGACATATCCTTCCC229633734ATACCCTCTCATCATTCACAAAATATTTTCCATACTTTCCTCCATAGCATTCTTTGTC
Capsicum annuum polygalacturonase (PG) mRNA, complete cds.
FJ596175.1:1-28
1ATACCCTCTCATCATTCACAAAATATTTTCCATACTTTCCTCCATAACATTCTTTGTC
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:24035133-24035160
GACAAAGAATGCTATGGAGGAAAGTATGGA24035133AAATATTTTGTGAATGATGAGAGGGTATGGGAAGGATATGTCTATTTATAGATTTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATACCCTCTCATCATTCACAAAATATTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATACCCTCTCATCATTCACAAAATATTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=ATACCCTCTCATCATTCACAAAATATTT&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=AAATATTTTGTGAATGATGAGAGGGTAT&k=0&no_gap=0&offset=0&limit=46
0.142 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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