GGGenome | Results

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2025-04-11 06:10:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 27 from patent US 10767189.
MV668014.1:166-190

TAAAAATTTATCAGNTCAAAAATATTTTTA166ATAGAGCTGCAATGTTTGGTTGATGGGAATCGAGGAACAAACAAGAATGTGTATC

Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:117431014-117431038

TAAAAATTTATCAGTTCAAAAATATTTTTA117431014ATAGAGCTGCAATGTTTGGTTGATGGGAATCGAGGAACAAACAAGAATGTGTATC

Gossypium hirsutum chromosome 10 SNP marker NG0203481 associated with blue disease resistance genomic sequence.
GU265863.1:166-190

TAAAAATTTATCAGCTCAAAAATATTTTTA166ATAGAGCTGCAATGTTTGGTTGATGGGAATCGAGGAACAAACAAGANTGTGTATC

Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:2301284-2301308

GATACACACTCTTGTTTGTTCCTCGATTCC2301284CATCAACCAAACATTGCAGCTCTATTAAAAATATTTTTGAACTGATAAATTTTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=ATAGAGCTGCAATGTTTGGTTGATG&k=0&no_gap=0&offset=0&limit=50
0.182 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CATCAACCAAACATTGCAGCTCTAT&k=0&no_gap=0&offset=0&limit=47
0.183 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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