GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 17:20:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

E0972 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E0972, mRNA sequence.
BG543450.1:74-93
AGAAAGAGATAACATTTAACAAAAGATGGC74ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
39RDBRT_UP_046_H06_22JUL2004_034 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272860.1:131-150
AGAAAGAGATAACATTTAACAAAAGATGGC131ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
36RDBRG_UP_002_C03_09JUN2004_027 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE516223.1:50-69
AGAAAGAGATAACATTTAACAAAAGATGGC50ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR002636 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-010G03 5', mRNA sequence.
EX017992.1:53-72
AGAAAGAGATAACATTTAACAAAAGATGGC53ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR003315 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-019B10 5', mRNA sequence.
EX018671.1:100-119
AGAAAGAGATAACATTTAACAAAAGATGGC100ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR003846 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-026A06 5', mRNA sequence.
EX019202.1:106-125
AGAAAGAGATAACATTTAACAAAAGATGGC106ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR004084 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-028H01 5', mRNA sequence.
EX019440.1:47-66
AGAAAGAGATAACATTTAACAAAAGATGGC47ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR005138 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-042F01 5', mRNA sequence.
EX020494.1:78-97
AGAAAGAGATAACATTTAACAAAAGATGGC78ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR005489 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-047C06 5', mRNA sequence.
EX020845.1:28-47
AAGAGATAACATTTAACAAAAGATGGC28ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR006174 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-058E05 5', mRNA sequence.
EX021530.1:106-125
AGAAAGAGATAACATTTAACAAAAGATGGC106ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR006754 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-067H04 5', mRNA sequence.
EX022110.1:59-78
AGAAAGAGATAACATTTAACAAAAGATGGC59ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR040269 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-006B03 5', mRNA sequence.
EX055625.1:28-47
AAGAGATAACATTTAACAAAAGATGGC28ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR040326 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-006G12 5', mRNA sequence.
EX055682.1:26-45
GAGATAACATTTAACAAAAGATGGC26ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR041015 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-017A05 5', mRNA sequence.
EX056371.1:25-44
AGATAACATTTAACAAAAGATGGC25ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR041838 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-027C09 5', mRNA sequence.
EX057194.1:51-70
AGAAAGAGATAACATTTAACAAAAGATGGC51ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR042556 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-036E05 5', mRNA sequence.
EX057912.1:24-43
GATAACATTTAACAAAAGATGGC24ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR043792 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-054E12 5', mRNA sequence.
EX059148.1:30-49
GAAAGAGATAACATTTAACAAAAGATGGC30ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR044696 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-067A03 5', mRNA sequence.
EX060052.1:77-96
AGAAAGAGATAACATTTAACAAAAGATGGC77ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR046376 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-102C06 5', mRNA sequence.
EX061732.1:54-73
AGAAAGAGATAACATTTAACAAAAGATGGC54ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR046551 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-104D03 5', mRNA sequence.
EX061907.1:10-29
AAAGATGGC10ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR053393 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-010E09 5', mRNA sequence.
EX068749.1:42-61
AGAAAGAGATAACATTTAACAAAAGATGGC42ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR054075 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-019G03 5', mRNA sequence.
EX069431.1:89-108
AGAAAGAGATAACATTTAACAAAAGATGGC89ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR055065 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-035C09 5', mRNA sequence.
EX070420.1:92-111
AGAAAGAGATAACATTTAACAAAAGATGGC92ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR055575 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-042A05 5', mRNA sequence.
EX070930.1:92-111
AGAAAGAGATAACATTTAACAAAAGATGGC92ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR094514 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-026G04 5', mRNA sequence.
EX108224.1:51-70
AGAAAGAGATAACATTTAACAAAAGATGGC51ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR096190 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-053F05 5', mRNA sequence.
EX109900.1:117-136
AGAAAGAGATAACATTTAACAAAAGATGGC117ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR097276 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-069B11 5', mRNA sequence.
EX110986.1:55-74
AGAAAGAGATAACATTTAACGAAAGATGGC55ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR099773 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-104B04 5', mRNA sequence.
EX113483.1:84-103
AGAAAGAGATAACATTTAACAAAAGATGGC84ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAGTCGGAGTGGG
BR100866 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-119A08 5', mRNA sequence.
EX114576.1:80-99
AGAAAGAGATAACATTTAACAAAAGATGGC80ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR070352 pistil cDNA library KCOV Brassica rapa subsp. pekinensis cDNA clone KCOV-13D02 5', mRNA sequence.
EX115653.1:131-150
AGAAAGAGATAACATTTAACAAAAGATGGC131ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR070368 pistil cDNA library KCOV Brassica rapa subsp. pekinensis cDNA clone KCOV-13F02 5', mRNA sequence.
EX115669.1:131-150
AGAAAGAGATAACATTTAACAAAAGATGGC131ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR070773 pistil cDNA library KCOW Brassica rapa subsp. pekinensis cDNA clone KCOW-01D02 5', mRNA sequence.
EX116074.1:131-150
AGAAAGAGATAACATTTAACAAAAGATGGC131ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR070789 pistil cDNA library KCOW Brassica rapa subsp. pekinensis cDNA clone KCOW-01F02 5', mRNA sequence.
EX116090.1:131-150
AGAAAGAGATAACATTTAACAAAAGATGGC131ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR122687 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-04B09 5', mRNA sequence.
EX138857.1:70-89
AGAAAGAGATAACATTTAACAAAAGATGGC70ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
BR123743 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-20B08 5', mRNA sequence.
EX139913.1:92-111
AGAAAGAGATAACATTTAACAAAAGATGGC92ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1986.
FX741720.1:80-99
AGAAAGAGATAACATTTAACAAAAGATGGC80ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
AC189521.2:58027-58046
AGAAAGAGATAACATTTAACAAAAGATGGC58027ATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGGG
Brassica rapa genome, scaffold: A01.
LR031571.1:115675-115694
CCCACTCCGATTTGTCCAACACAGGAGATG115675CCTTGAGGAGTGATGTTGATGCCATCTTTTGTTAAATGTTATCTCTTTCT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:115545-115564
CCCACTCCGATTTGTCCAACACAGGAGATG115545CCTTGAGGAGTGATGTTGATGCCATCTTTTGTTAAATGTTATCTCTTTCT
Triticum monococcum genome assembly, chromosome: 1A.
OY737858.1:477182-477201
CATAAACAAGCAACATCACCAACAAGCATA477182CCTTGAGGAGTGATGTTGATGAACCACCACATGTATTATTATGCATCCAA
Mystacides longicornis genome assembly, chromosome: 2.
OY756421.1:15406641-15406660
GAGGCGATCAGCTTATCTGGGTAGACAAAA15406641CCTTGAGGAGTGATGTTGATGACAAAAGAAATCATCAGCTAATGCTAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCAACATCACTCCTCAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCAACATCACTCCTCAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.581 | 2.572 | search_plus_done; http://172.18.8.135:50400/match?q=ATCAACATCACTCCTCAAGG&k=0&no_gap=0&offset=0&limit=50
2.630 | 0.049 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTGAGGAGTGATGTTGAT&k=0&no_gap=0&offset=0&limit=13
2.633 | 0.003 | cgi_end;

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