GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:33:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14670.
FX702239.1:194-213
TTTTGATCTCTCTTCCATCTCCTTGTTCTA194ATCACTCGCTGAATCTCCTAGTTGGTGTCTTCAAAGGACTTGACCATTTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8735.
FX738166.1:1342-1361
CAAATGGTCAAGTCCTTTGAAGACACCAAC1342TAGGAGATTCAGCGAGTGATTAGAACAAGGAGATGGAAGAGAGATCAAAA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:12136083-12136102
AATAAAGAAAGTACCTTTGAAGACACCAAC12136083TAGGAGATTCAGCGAGTGATTAGAACAAGGAGATGGAAGAGAGATCAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCACTCGCTGAATCTCCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCACTCGCTGAATCTCCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.108 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=ATCACTCGCTGAATCTCCTA&k=0&no_gap=0&offset=0&limit=50
0.138 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGAGATTCAGCGAGTGAT&k=0&no_gap=0&offset=0&limit=49
0.140 | 0.001 | cgi_end;

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