GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:22:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:4542499-4542518
TTGAAAAATAATATTAATATATGTGTATTC4542499ATCGCATACGGATATAATGCCAATTTGTTTTGCTTATATATATAAAAATA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:4251816-4251835
TTGAAAAATAATATTAATATATGTGTATTC4251816ATCGCATACGGATATAATGCCAATTTGTTTTGCTTATATATATATAAAAG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:4675607-4675626
TTGAAAAATAATATTAATATATGTGTATTC4675607ATCGCATACGGATATAATGCCAATTTGTTTTGCTTATATATATATAAAAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:37348499-37348518
TCATAACTTAATATTAATATATGTGTATTC37348499ATCGCATACGGATATAATGCCAATTTGTTTTGCTTATATATATAAAAGTA
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:4934612-4934631
CTTGAAAAATAATATTAAATATGTGTATTC4934612ATCGCATACGGATATAATGCCAATTTGTTTTGCTTATATATATATATATA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:3689775-3689794
TTGAAAAATAATATTAATAGATTTGTATTC3689775ATCGCATACGGATATAATGCCAATTTTTTTTGCTCATATATATAAAAGTA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:38748471-38748490
TACTTTTATATATATGAGCAAAACAAATTG38748471GCATTATATCCGTATGCGATGAATACACATATATTAATATTATTTTTCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCGCATACGGATATAATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCGCATACGGATATAATGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=ATCGCATACGGATATAATGC&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=GCATTATATCCGTATGCGAT&k=0&no_gap=0&offset=0&limit=44
0.118 | 0.001 | cgi_end;

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