GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 12:15:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WHE2631_C11_F21ZT Sumai3 Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE2631_C11_F21, mRNA sequence.
CD374093.1:320-342
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC320ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTACGCACCGCGAGCGCCCTGCC
BG01017A1A11.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG01017A1A11.r1, mRNA sequence.
EG382831.1:316-338
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC316ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCCCTGCC
BG02016A1B05.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02016A1B05.r1, mRNA sequence.
FF352233.1:333-355
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC333ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCCCTGCC
BG02041A2D05.r2 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02041A2D05.r2, mRNA sequence.
FF365058.1:390-412
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC390ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCCCTGCC
030523KASB001927HT (KASB) Subtractive library using two extreme individuals from Kiwifruit Mapping population Actinidia chinensis cDNA clone KASBB00192, mRNA sequence.
FG525331.1:362-384
CCGCCGCCGTCGCGGCCGCAAAACGCCGAG362ATCTTGCCGTCGAACTTGTTCGCCCTGCCGCTCCTCACCGCCAACGGTCGCCC
ICPL20102_CW68_G11 Fusarium wilt challenged (25 DAI) pigeonpea genotype ICPL20102 root cDNA library Cajanus cajan cDNA clone ICPL20102_CW68_G11 5', mRNA sequence.
GR466581.1:476-498
CCGTTTCCCTCTCTCGCGGGAAACGCAAAA476ATCTTGCCGTCGAACTTGTTCGCCTTTCCGCTCCGAATCGCCACCGGCCTCCC
Elaeis guineensis EST, clone (6lib)_isotig07330.
LM617910.1:414-436
CCTCCTCCCTCCCTCCCTGGGAACGCCGAA414ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCCAGAGGCAGCCC
Triticum aestivum mRNA, clone: H10-tplb0044o20b, 3'-EST, cultivar Chinese Spring.
LU046800.1:336-358
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC336ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
TSA: Ficus carica mRNA, contig: FICAF00891.
FX377865.1:270-292
CCGTTCCCTTCCCTCCCCGGAAACGCCGAG270ATCTTGCCGTCGAACTTGTTCGCCCTGCCGCTCCTCACCGCCACCGGCTTCCC
TSA: Ficus carica mRNA, contig: FICAF03369.
FX380343.1:204-226
CCGTTCCCTTCCCTCCCCGGAAACGCCGAG204ATCTTGCCGTCGAACTTGTTCGCCCTGCCGCTCCTCACCGCCACCGGCTTCCC
TSA: Elaeis guineensis isotig07972.Elguifruit mRNA sequence.
JO095203.1:276-298
CCTCCTCCCTCCCTCCCTGGGAACGCCGAA276ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCCAGAGGCAGCCC
TSA: Elaeis guineensis isotig08694.Elguifruit mRNA sequence.
JO095924.1:533-555
CCTCCTCCCTCCCTCCCTGGGAACGCCGAA533ATCTTGCCGTCGAACTTGTTCGCCCGCCCACTCCGCAACGCCAGGGGCTGCCC
TSA: Triticum aestivum Ta_Contig64039.ansp mRNA sequence.
JV846935.1:405-427
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC405ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
104_791_11466622_116_36275_087 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11466622, genomic survey sequence.
CW306037.1:250-272
CCGTCCCCCGCCTGGCCGGGGAACGCGGAC250ATCTTGCCGTCGAACTTGTTCGCGCGTCCGCTCCGCACGGCGAGCGCGCGGCC
ZCY004B16.F ZCY Panicum hallii genomic 5', genomic survey sequence.
KO564834.1:138-160
CCATCCCCAGCCTGCCCCGGGAACGCCGAC138ATCTTGCCGTCGAACTTGTTCGCGCGGCCGCTCCGCACGGCGAGCGCGCGGCC
Aegilops umbellulata cultivar TA1851 chromosome 1U.
CP136054.1:429000445-429000467
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC429000445ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCCCTGCC
Sorghum bicolor cultivar Hongyingzi chromosome 9.
CP137833.1:56283573-56283595
CCGTCCCCCGCCTGGCCGGGGAACGCGGAC56283573ATCTTGCCGTCGAACTTGTTCGCGCGTCCGCTCCGCACGGCGAGCGCGCGGCC
Sorghum bicolor cultivar Huandiaonuo chromosome 9.
CP137843.1:55867702-55867724
CCGTCCCCCGCCTGGCCGGGGAACGCGGAC55867702ATCTTGCCGTCGAACTTGTTCGCGCGTCCGCTCCGCACGGCGAGCGCGCGGCC
Secale cereale genome assembly, chromosome: 1R.
LR738709.1:554388263-554388285
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC554388263ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR862509.1:510390352-510390374
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC510390352ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR862510.1:372769649-372769671
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC372769649ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR862530.1:500919508-500919530
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC500919508ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR862531.1:372532290-372532312
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC372532290ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
LR862550.1:480714336-480714358
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC480714336ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR862552.1:369938697-369938719
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC369938697ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR865459.1:502260309-502260331
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC502260309ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR865460.1:372294259-372294281
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC372294259ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR865480.1:495883286-495883308
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC495883286ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR865481.1:372809793-372809815
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC372809793ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
LR865500.1:470505752-470505774
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC470505752ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR865501.1:513349595-513349617
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC513349595ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR865502.1:371894241-371894263
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC371894241ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
LR865739.1:475710986-475711008
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC475710986ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR865740.1:515328402-515328424
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC515328402ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR865741.1:374330115-374330137
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC374330115ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
LR865760.1:479809456-479809478
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC479809456ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR865761.1:501918545-501918567
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC501918545ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR877310.1:508232990-508233012
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC508232990ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR877311.1:378985418-378985440
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC378985418ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
LR878435.1:475010619-475010641
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC475010619ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
LR878436.1:503236538-503236560
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC503236538ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LR878437.1:373688048-373688070
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC373688048ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Aegilops sharonensis genome assembly, chromosome: 1S.
LR880966.1:581118763-581118785
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC581118763ATCTTGCCGTCGAACTTGTTCGCACGCCCGCTCCGCACGGCGAGCGCCCTGCC
Aegilops longissima genome assembly, chromosome: 1S.
LR881069.1:550822943-550822965
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC550822943ATCTTGCCGTCGAACTTGTTCGCACGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
LS992080.1:474430963-474430985
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC474430963ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
LS992082.1:375368309-375368331
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC375368309ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum turgidum subsp. durum genome assembly, chromosome: 1A.
LT934111.1:466332676-466332698
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC466332676ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum turgidum subsp. durum genome assembly, chromosome: 1B.
LT934112.1:492930004-492930026
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC492930004ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
OU015722.1:519908684-519908706
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC519908684ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
OU015723.1:379461064-379461086
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC379461064ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
OU343169.1:486914392-486914414
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC486914392ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
OU343176.1:514965874-514965896
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC514965874ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
OU343183.1:382213811-382213833
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC382213811ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
OU963872.1:480458465-480458487
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC480458465ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
OU963874.1:375177699-375177721
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC375177699ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
OV100737.1:471342903-471342925
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC471342903ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
OV100739.1:373737600-373737622
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC373737600ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
OW530310.1:471342903-471342925
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC471342903ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
OW530312.1:373737600-373737622
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC373737600ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Bromus sterilis genome assembly, chromosome: 7.
OX465601.1:37441548-37441570
CCGTCGCCGGCCTGCCCCGGGAACGCTGAC37441548ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCCACCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1A.
OX637225.1:385325256-385325278
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC385325256ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum aestivum genome assembly, chromosome: 1B.
OX637226.1:433693584-433693606
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC433693584ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC
Triticum aestivum genome assembly, chromosome: 1D.
OX637227.1:281813509-281813531
CCGTCCCCGGCCTGGCCCGGGAACGCCGAC281813509ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACGGCGAGCGCCCTGCC
Phragmites australis genome assembly, chromosome: 9.
OY282620.1:28143651-28143673
CCGTCCCCAGCCTGCCCGGGGAACGCCGAC28143651ATCTTGCCGTCGAACTTGTTCGCGCGGCCGCTCCGTACGGCGAGCGCGCGGCC
Phragmites australis genome assembly, chromosome: 11.
OY282622.1:26484318-26484340
CCGTCGCCAGCCTGGCCGGGGAACGCCGAC26484318ATCTTGCCGTCGAACTTGTTCGCGCGGCCGCTCCGCACGGCGAGCGGTCGGCC
Sphenostylis stenocarpa genome assembly, chromosome: 4.
OY731401.1:49705990-49706012
CCGTTGCCTTCTCTACCCGGAAACGCCGAG49705990ATCTTGCCGTCGAACTTGTTCGCTTTGCCACTCCGAATCGCAACGGGCCTTCC
Triticum monococcum genome assembly, chromosome: 1A.
OY737850.1:522786019-522786041
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC522786019ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum monococcum genome assembly, chromosome: 1A.
OY737858.1:518738146-518738168
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC518738146ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum timopheevii genome assembly, chromosome: 1At.
OY997261.1:488796082-488796104
CCGTCCCCGGCCTGCCCCGGGAACGCCGAC488796082ATCTTGCCGTCGAACTTGTTCGCCCGCCCGCTCCGCACCGCGAGCGCCCTGCC
Triticum timopheevii genome assembly, chromosome: 1G.
OY997262.1:344552004-344552026
CCGTCCCCCGCCTGGCCCGGGAACGCCGAC344552004ATCTTGCCGTCGAACTTGTTCGCCCGGCCGCTCCGCACGGCGAGCGCTCTGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCTTGCCGTCGAACTTGTTCGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTTGCCGTCGAACTTGTTCGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.714 | 0.705 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTTGCCGTCGAACTTGTTCGC&k=0&no_gap=0&offset=0&limit=50
0.776 | 0.062 | search_minus_done; http://172.18.8.135:50400/match?q=GCGAACAAGTTCGACGGCAAGAT&k=0&no_gap=0&offset=0&limit=0
0.776 | 0.000 | cgi_end;

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