GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 20:29:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ovis canadensis canadensis isolate 43U chromosome 7 sequence.
CP011892.1:85189238-85189257
CCAACATCAGAGCCAGGGACCCAAGATGGG85189238ATGAGAAGGAAGCTGCAGGAACTTAATCACGTCACTTATGCCATATGCTG
Sambucus nigra genome assembly, chromosome: 2.
OX422208.1:583696936-583696955
AATTACTTCCTTCCCGTAGTTCAAAGGGAG583696936ATGAGAAGGAAGCTGCAGGATGTGGTACAAGGGGAGCATTCTGTAGCGAA
Drepana falcataria genome assembly, chromosome: 2.
OX243923.1:12839157-12839176
ATAGCGAGGCTGTGGATGAGACTCCAGCGG12839157ATGAGAAGGAAGCTGCAGGAAGGCCGGTGTTCCAAGCAAAGTCCAAACAC
Dianthus caryophyllus mRNA, clone: CES04A22, 5' end sequence.
FY383626.1:296-315
GAATTTGTGGCGTGTGCGTGGCGTACGTCT296TCCTGCAGCTTCCTTCTCATCAGTTTCATCTACCAGAAGACGAGTGGTTA
Dianthus caryophyllus mRNA, clone: CES05E16, 5' end sequence.
FY384093.1:304-323
GAATTTGTGGCGTGTGCGTGGCGTACGTCT304TCCTGCAGCTTCCTTCTCATCAGTTTCATCTACCAGAAGACGAGTGGTTA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.245.C1.
FX296972.1:302-321
GAATTTGTGGCGTGTGCGTGGCGTACGTCT302TCCTGCAGCTTCCTTCTCATCAGTTTCATCTACCAGAAGACGAGTGGTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGAGAAGGAAGCTGCAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAGAAGGAAGCTGCAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAGAAGGAAGCTGCAGGA&k=0&no_gap=0&offset=0&limit=50
0.279 | 0.171 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTGCAGCTTCCTTCTCAT&k=0&no_gap=0&offset=0&limit=47
0.281 | 0.002 | cgi_end;

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