GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:02:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:19985389-19985408
TTAATCCAAAAGTATCTATAACGAGATTAC19985389ATGATCTCAAAATCCCACAAATAAAGCAAAGAAACAAAGTAACCCTCCTA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:24332727-24332746
TTAATCCAAAAGTATGTGTAACAAGATAAC24332727ATGATCTCAAAATCCCACAAAGAAAGGAAATAAGTAATCCTCTTAATGAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:18572765-18572784
CTAATCCAAAAGTATCTATAACGAGATTAC18572765ATGATCTCAAAATCCCACAAATATAGCAAAGAAACGAAGTAAGTAACCCT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:22827776-22827795
TTAATCCAAAAGTATGTGTAACAAGATAAC22827776ATGATCTCAAAATCCCACAAAGAAAGGAAATAAGTAATCCTCTTAATGAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:15179695-15179714
TTAATCCAAAAGTATCTATAACGAGATTAC15179695ATGATCTCAAAATCCCACAAATAAAGCAAAGAAACAAAGTAACCCTCCTA
Acer campestre genome assembly, chromosome: 4.
OX940802.1:26635530-26635549
ACCATCGGATTCTTTTGGACTTGGAGACTC26635530ATGATCTCAAAATCCCACAATTGCCACCCTTACTGAGCAGTTTCAGAAGT
Viscum album genome assembly, chromosome: B1.
OY728167.1:591130412-591130431
GAATACCCTTATCATCGTCTTAAAAAAACT591130412ATGATCTCAAAATCCCACAACAAACAACGAGGTTTAACTGAAATGAGGAA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5350265-5350284
TGGTGAACAAGGGATGTGACATGTTGGTGG5350265ATGATCTCAAAATCCCACAATGTTGGTACCAATTGCCACATAAGGGGTTA
Gonocerus acuteangulatus genome assembly, chromosome: 5.
OX328127.1:64050666-64050685
AATACAAATATTCTCTCACACCGGCAGAAA64050666ATGATCTCAAAATCCCACAACAGAAGCCGCAATACTCAATAACATTACAT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 3.
OX392549.1:5552686-5552705
GTGTTTTACACAGAATTTTATTTTCGGATT5552686TTGTGGGATTTTGAGATCATATAATGTCAGAGAACCGCTCTAATATGAGC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:22466554-22466573
AGGGTTACTTAGTTCATTTCTTTGCTTTAT22466554TTGTGGGATTTTGAGATCATGTAATCTCCTTATAGATACTTTTGGATTAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:3273193-3273212
AGGATTACTTATTTCCTTTCTTTGCTTTAT3273193TTGTGGGATTTTGAGATCATGTTATCTCATTATAAATACTTTTGGATCAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392559.1:22673599-22673618
AGGGTTACTTAGTTCATTTCTTTGCTTTAT22673599TTGTGGGATTTTGAGATCATGTAATCTCCTTATAGATACTTTTGGATTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGATCTCAAAATCCCACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGATCTCAAAATCCCACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.082 | search_plus_done; http://172.18.8.135:50400/match?q=ATGATCTCAAAATCCCACAA&k=0&no_gap=0&offset=0&limit=50
0.110 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTGGGATTTTGAGATCAT&k=0&no_gap=0&offset=0&limit=41
0.113 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).