GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:52:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

010425AASA006454HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA006454, mRNA sequence.
CN878934.1:15-33
CTCAAGCTTCATCC15ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
010417AASA002542HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA002542, mRNA sequence.
CN880465.1:13-31
CAAGCTCCGGCC13ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
010715ABBA001302HT (ABBA) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBA001302, mRNA sequence.
CN900491.1:66-84
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC66ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
020613ABKA001118HT (ABKA) Royal Gala temperature stressed leaves Malus domestica cDNA clone ABKA001118, mRNA sequence.
CN907010.1:56-74
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC56ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
010917AVBC040036PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC040036, mRNA sequence.
CN941387.1:42-60
TTATCCGATTATTCTCCTCAAGCTTCATCC42ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
010921AVBC075006PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC075006, mRNA sequence.
CN942705.1:50-68
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC50ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
020805AVBC012244HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012244, mRNA sequence.
CN948020.1:65-83
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC65ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
Mddb5015d18.y1 Mddb Malus domestica cDNA clone Mddb5015d18 5' similar to TR:O80439 O80439 PUTATIVE RIBOSOMAL PROTEIN S31, mRNA sequence.
CO865355.1:48-66
TTATCCGATTATTCTCCTCAAGCTTCATCC48ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
Mddb5027i09.y1 Mddb Malus domestica cDNA clone Mddb5027i09 5' similar to TR:O80439 O80439 PUTATIVE RIBOSOMAL PROTEIN S31, mRNA sequence.
CV084146.1:65-83
TTATCCGATTATTCTCCTCAAGCTTCATCC65ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
Mdfrt3086j04.y1 Mdfrt Malus domestica cDNA clone Mdfrt3086j04 5' similar to TR:O80439 O80439 PUTATIVE RIBOSOMAL PROTEIN S31, mRNA sequence.
CV129867.1:47-65
TTATCCGATTATTCTCCTCAAGCTTCATCC47ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
Mdfrt3095k18.y2 Mdfrt Malus domestica cDNA clone Mdfrt3095k18 5' similar to TR:O80439 O80439 PUTATIVE RIBOSOMAL PROTEIN S31, mRNA sequence.
CV466123.1:47-65
TTATCCGATTATTCTCCTCAAGCTTCATCC47ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
Mdlv4-4043g22.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4043g22 5' similar to TR:O80439 O80439 PUTATIVE RIBOSOMAL PROTEIN S31, mRNA sequence.
CX025178.1:55-73
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC55ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
PPL-20-A01 Prunus persica L. leaf tissue, Plum Pox Virus infected Prunus persica cDNA, mRNA sequence.
DN555684.1:37-55
CTCTCAAGCGTCAAGCTTCAAGCTTCAACC37ATGGCGTCACTGATACTCGGAGCTCTTCCAATCCCCACTCAAACGCTCA
Pbzs207 SSH cDNA library of pear cv. Zaosu inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GR957654.1:64-82
TTATCCGCTTATTCTCCTCAAGCTTCATCC64ATGGCGTCACTGATACTCGGAGCTCCCCCGGCCCCCTCTCAGTCGCTCG
Pbzs476 SSH cDNA library of pear cv. Zaosu inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GR957715.1:64-82
TTATCCGCTTATTCTCCTCAAGCTTCATCC64ATGGCGTCACTGATACTCGGAGCTCCCCCGGCCCCCTCTCAGTCGCTCG
Pbzs485 SSH cDNA library of pear cv. Zaosu inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GR957718.1:64-82
TTATCCGCTTATTCTCCTCAAGCTTCATCC64ATGGCGTCACTGATACTCGGAGCTCCCCCGGCCCCCTCTCAGTCGCTCG
Prunus avium EST, clone WZ0APVCA27YN01FM1.
HE641925.1:57-75
TCCGCTTCTCTCAAGCTTCAAGCGTCAACC57ATGGCGTCACTGATACTCGGAGCTCTTCCAATCCCCACTCAAACGCTCG
Prunus avium EST, clone WZ0APVCA11YD23FM1.
HE643091.1:78-96
TCCGCTTCTCTCAAGCTTCAAGCGTCAACC78ATGGCGTCACTGATACTCGGAGCTCTTCCAATCCCCACTCAAACGCTCG
Prunus avium EST, clone WZ0APVCA20YD21FM1.
HE646205.1:79-97
TCCGCTTCTCTCAAGCTTCAAGCGTCAACC79ATGGCGTCACTGATACTCGGAGCTCTTCCAATCCCCACTCAAACGCTCG
TSA: Pyrus pyrifolia mRNA, contig: contig_16557.
FX400188.1:41-59
TTATCCGCTTCTTCTCCTCAAGCTCCGGCC41ATGGCGTCACTGATACTCGGAGCTCCCCCGGCCCCCTCTCAGTCGCTCG
TSA: Pyrus communis mRNA, contig: lc1934.
FX610521.1:51-69
TTATCCGCTTCTTCTCCTCAAGCTCCGGCC51ATGGCGTCACTGATACTCGGAGCTCCCCCGGCCCCCTCTCAGTCGCTCG
TSA: Pyrus communis mRNA, contig: lc2118.
FX610705.1:53-71
TTATCCGATTATTCTCCTCAAGCTTCATCC53ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCTCTCAATCGCTCG
TSA: Pyrus communis mRNA, contig: lc7377.
FX615962.1:51-69
TTATCCGCTTATTCTCCTCAAGCTTCATCC51ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCTCTCAATCGCTCG
TSA: Pyrus communis mRNA, contig: lc36425.
FX644097.1:32-50
TTATCCGCTTCTTCTCCTCAAGCTCCGGCC32ATGGCGTCACTGATACTCGGAGCTCCCCTGGCCCCCTCTCAGTCGCTCG
TSA: Pyrus communis mRNA, contig: lc42309.
FX649368.1:31-49
TTNTCCGATTATTCTCCTCAAGCTTCATCC31ATGGCGTCACTGATACTCGGAGCTCCACCAGNTCAATCGCTCGACTTTA
TSA: Pyrus x bretschneideri Unigene77439_XinShao mRNA sequence.
JR662452.1:123-141
TTATCCGCTTCTTCTCCTCAAGCTCTGGCC123ATGGCGTCACTGATACTCGGAGCTCCCCCGGCCCCCTCTCAGTCGCTCG
Prunus dulcis DNA, pseudomolecule Pd06.
AP019302.1:23632934-23632952
TCCGCTTCTCTCAAGCGTCAAGCTTCAACC23632934ATGGCGTCACTGATACTCGGAGCTCTTCCAATCCCCACTCAAACGCTCA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:22186089-22186107
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC22186089ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCACCTCTCAGTCGCTTG
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:23112700-23112718
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC23112700ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCATG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:22115506-22115524
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC22115506ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCACCTCTCAGTCGCTTG
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:23457922-23457940
TTATCCGATTATTCTCCTCAAGCTTCATCC23457922ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCTCTCAATCGCTCG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:21446643-21446661
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC21446643ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:22590498-22590516
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC22590498ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:21444303-21444321
TTATCTGCTTCTTCTCCTCAAGCTCCGGCC21444303ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:22139556-22139574
TTATCCGATTATTCTCCTCAAGCTTCATCC22139556ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCTCTCTATCGCTCG
Malus baccata partial s31 gene for Putative 30S ribosomal protein, exons 1-3.
LM999992.1:1-19
1ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:22607765-22607783
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC22607765ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus domestica genome assembly, chromosome: 4.
OU744545.1:22832603-22832621
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC22832603ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus domestica genome assembly, chromosome: 4.
OU744956.1:23098433-23098451
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC23098433ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus domestica genome assembly, chromosome: 4.
OU744994.1:22921160-22921178
TTATCTGCTTCTCCTCCTCAAGCTCCGGCC22921160ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCAGTCGCTTG
Malus domestica genome assembly, chromosome: 12.
OU745002.1:23048776-23048794
TTATCCGATTATTCTCCTCAAGCTTCATCC23048776ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCG
Geum urbanum genome assembly, chromosome: 3.
OX326999.1:73668604-73668622
CTCTCTCCGGAGCTTCATAGCTTTTCAGCT73668604ATGGCGTCACTGATACTCGGAGCTCTCCCTATCCCCACACAATCCCTCG
Geum urbanum genome assembly, chromosome: 7.
OX327003.1:33825829-33825847
CTCTCCCCAGAGCTTCATAGCTTTTCAGCT33825829ATGGCGTCACTGATACTCGGAGCTCTCCCTATCCCCACACAATCCCTCG
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:35850932-35850950
TTATCCGCTTCTTCTCCTCAAGCTCCGGCC35850932ATGGCGTCACTGATACTCGGAGCTCCCCCAGCCCCCTCTCTGTCGCTCG
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:15206178-15206196
TTATCCGCTTCTTCTCCTCAAGCTCCGGCC15206178ATGGCGTCACTGATACTCGGTGCTCCCCCGGCCCCCTCTCAGTCGCTCG
Prunus persica EST, clone Skin93F09.
AM289546.1:582-600
TGAGCGTTTGAGTGGGGATTGGAAGAGCTC582CGAGTATCAGTGACGCCATGGTTGAAGCTTGAAGCTTGACGCTTGAGAG
Mddb5027I09_e3164.g1 Mddb Malus domestica cDNA 5' similar to ref|NP_181349.1| chloroplast 30S ribosomal protein S31 [Arabidopsis thaliana] pir|T01246 30S ribosomal protein S31 [imported] - Arabidopsis
GO567049.1:211-229
CGAGCGATTGAGGGGGGGCTGGTGGAGCTC211CGAGTATCAGTGACGCCATGGATGAAGCTTGAGGAGAATAATCGGATAA
Pbzs462 SSH cDNA library of pear cv. Zaosu inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GR957712.1:496-514
CGAGCGACTGAGAGGGGGCCGGGGGAGCTC496CGAGTATCAGTGACGCCATGGATGAAGCTTGAGGAGAATAAGCGGATAA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:8479186-8479204
CGAGCGATTGAGGGGGGGCTGGTGGAGCTC8479186CGAGTATCAGTGACGCCATGGATGAAGCTTGAGGAGAATAATCGGATAA
Malus domestica genome assembly, chromosome: 4.
OU696680.1:22327538-22327556
CAAGCGACTGAGAGGGGGCTGGGGGAGCTC22327538CGAGTATCAGTGACGCCATGGCCGGAGCTTGAGGAGGAGAAGCAGATAA
Geum urbanum genome assembly, chromosome: 1.
OX326997.1:83879632-83879650
CGAGGGATTGTGTGGGGATATTGAGAGCTC83879632CGAGTATCAGTGACGCCATAGCTGAAAAGCTATGAAGCTCTGGGGAGAG
Geum urbanum genome assembly, chromosome: 4.
OX327000.1:70636081-70636099
CGAGCGATTGTGTTGGGATAGGGAGAGCTC70636081CGAGTATCAGTGACGCCATAGCTGAAGCTATGAAGCTCTCTGGGGAGAG
Geum urbanum genome assembly, chromosome: 4.
OX327000.1:70636350-70636368
CGAGCGATTGTGTTGGGATAGGGAGAGCTC70636350CGAGTATCAGTGACGCCATAGCTGAAGCTATGAAGCTCTCTGGGGAGAG
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:8054110-8054128
CATGCGACTGAGAGGGGGCTGGGGGAGCTC8054110CGAGTATCAGTGACGCCATGGCCGGAGCTTGAGGAGGAGAAGCAGATAA
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:6470123-6470141
CGAGCGATTGAGAGGGGGCTGGTGGAGCTC6470123CGAGTATCAGTGACGCCATGGATGAAGCTTGAGGAGAATAAGCGGATAA
Gastrophysa polygoni genome assembly, chromosome: 1.
OY755082.1:33571061-33571079
AAATAGGTTCTCAAAAATTATTATCAATCT33571061CGAGTATCAGTGACGCCATCATGGGATTTGCCCTATTTCCTGCTATGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGGCGTCACTGATACTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGCGTCACTGATACTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.038 | 1.030 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGCGTCACTGATACTCG&k=0&no_gap=0&offset=0&limit=50
1.268 | 0.229 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGTATCAGTGACGCCAT&k=0&no_gap=0&offset=0&limit=5
1.275 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).