GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 02:03:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Musa troglodytarum cultivar karat chromosome 5.
CP097507.1:9321763-9321782
GCGGCGTTGAAGCGGGGATGGATGGTGTGG9321763ATGTAGAAGGGCGCAATGTCGGGATCGCACGTCTCCGGCGAGTGGCTGAG
TSA: Musa acuminata AAA Group Unigene14899_B1 mRNA sequence.
JV360469.1:294-313
GTCAGCCGCTCGCCGGAGACGTGCGATCCC294GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
TSA: Musa acuminata AAA Group Unigene100205_NK1 mRNA sequence.
JV432519.1:302-321
GTCAGCCGCTCGCCGGAGACGTGCGATCCC302GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata subsp. malaccensis isolate AA chromosome 5.
CP126374.1:6604793-6604812
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6604793GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata subsp. malaccensis isolate AA chromosome 16.
CP126385.1:6592335-6592354
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6592335GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A05.
HG996470.1:6815439-6815458
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6815439GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa schizocarpa genome assembly, chromosome: S05.
LS990919.1:7419153-7419172
CTCAGCCGCTCGCCGGAGACGTGCGATCCC7419153GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGTAGAAGGGCGCAATGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTAGAAGGGCGCAATGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTAGAAGGGCGCAATGTC&k=0&no_gap=0&offset=0&limit=50
0.164 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=GACATTGCGCCCTTCTACAT&k=0&no_gap=0&offset=0&limit=49
0.168 | 0.004 | cgi_end;

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