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2025-04-10 18:02:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 17646 from patent US 7557201.
GP486649.1:17-36

GCAGAGTAGGATGACG17ATGTGCAGGTTCTTCACTCATGCGGTCCTTCTGTCCTGATAGCTGATGAC

GR__Ea13O21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea13O21 3', mRNA sequence.
CO092723.1:70-89

ACGACGACGACGAAGGACAGGAGGATGACG70ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

GR__Eb31N01.r GR__Eb Gossypium raimondii cDNA clone GR__Eb31N01 3', mRNA sequence.
CO130189.1:288-307

ACGACGACGACGAAGGAGAGGAGGATGACG288ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

g080h08a Gossypium hirsutum 5-25 dpa fiber library Gossypium hirsutum cDNA, mRNA sequence.
DR044172.1:275-294

GACGACGACGACAAGGAGAGGAGGATGACG275ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

g025h03a Gossypium hirsutum 5-25 dpa fiber library Gossypium hirsutum cDNA, mRNA sequence.
DR044179.1:77-96

CGACGACGACNACAAGAGAGGAGGATGACG77ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

EST1073311 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT562671.1:215-234

ACGACGACGACGAAGGAGAGGAGGATGACG215ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

GH_HYPT_01-01-08R_C01_InvR_21Apr04_011_F Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW225411.1:2-21

G2ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

GH_HYPT_01-01-30R_C06_InvR_29Apr04_044_F Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW227132.1:192-211

AGGAAGACGACGAAGGAGAGGTGGATGACG192ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

GH_RMIRS_012_C01_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW478079.1:248-267

TGAAGGCGAAGATAGGAGAGGAGGATGACG248ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

UFL_190_39 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES830252.1:335-354

ACGACGACGACGAAGGAGAGGAGGATGACG335ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

EST004189 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 16-M16 5', mRNA sequence.
GR710989.1:252-271

ACGACGACGACGAAGGAGAGGAGGATGACG252ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

mhczaa0_025072.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_025072.z1, mRNA sequence.
JG839143.1:393-412

ACGACGACGACGACGGAGAGGAGGATGACG393ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

mhczaa0_016416.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_016416.z1, mRNA sequence.
JG844303.1:394-413

ACGACGACGACGACGGAGAGGAGGATGACG394ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

D10-102D10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK790789.1:276-295

ACGACGACGACGAAGGAGAGGAGGATGACG276ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

A01-028A1 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791359.1:273-292

ACGACGACGACGAAGGAGAGGAGGATGACG273ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

C09-115C09 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791384.1:275-294

ACGACGACGACGAAGGAGAGGAGGATGACG275ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

E09-105D07 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791596.1:275-294

ACGACGACGACGAAGGAGAGGAGGATGACG275ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

F08-079F8 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK792529.1:178-197

ACGACGACGACGAAGGAGAGGAGGATGACG178ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

D01-093D01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK792737.1:273-292

ACGACGACGACGAAGGAGAGGAGGATGACG273ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

C08-008-C8 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793013.1:277-296

ACGACGACGACGAAGGAGAGGAGGATGACG277ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

B09-104B09 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793119.1:275-294

ACGACGACGACGAAGGAGAGGAGGATGACG275ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

C09-4-C9 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793231.1:23-42

GACGAAGGAGAGGAGGATGACG23ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

F05-4-F5 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793961.1:199-218

ACGACGACGACGAAGGAGAGGAGGATGACG199ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

H10-54H10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794784.1:199-218

ACGACGACGACGAAGGAGAGGAGGATGACG199ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

D01-108D01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794803.1:278-297

ACGACGACGACGAAGGAGAGGAGGATGACG278ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

G01-114G01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795598.1:270-289

ACGACGACGACGAAGGAGAGGAGGATGACG270ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

D07-105D07 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795728.1:274-293

ACGACGACGACGAAGGAGAGGAGGATGACG274ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

E01-043G04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796012.1:183-202

ACGACGACGACGAAGGAGAGGAGGATGACG183ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

F12-23-F12 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796223.1:281-300

ACGACGACGACGAAGGAGAGGAGGATGACG281ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

G05-071G5 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796488.1:275-294

ACGACGACGACGAAGGAGAGGAGGATGACG275ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

A10-104A10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797796.1:272-291

ACGACGACGACGAAGGAGAGGAGGATGACG272ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

A07-109A07 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK800016.1:178-197

ACGACGACGACGAAGGAGAGGAGGATGACG178ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

G01-75G01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801013.1:272-291

ACGACGACGACGAAGGAGAGGAGGATGACG272ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

G01-76G01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801070.1:276-295

ACGACGACGACGAAGGAGAGGAGGATGACG276ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

ndcxa0_0009_F11.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ369093.1:267-286

ACGACGACGACGAAGGAGAGGAGGACGACG267ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

ndcxa0_0010_D10.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ369145.1:332-351

ACGACGACGACGAAGGAGAGGAGGATGACG332ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

ndcxa0_0032_A04.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ370826.1:270-289

ACGACGACGACGAAGGAGAGGAGGATGACG270ATGTGCAGGTTCTTCACTCATCCGGTCCCCCTGTCCTGATAGCTGATGAC

ndcxe0_0031_E10.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ382166.1:273-292

ACGACGACGACGAAGGAGAGGAGGATGACG273ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:2334955-2334974

ACGACGACGACGAAGGAGAGGAGGATGACG2334955ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:2311600-2311619

ACGACGACGACGAAGGAGAGGAGGATGACG2311600ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:3271553-3271572

ACGACGACGACGAAGGAGAGGAGGATGACG3271553ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

UNVERIFIED: Gossypium hirsutum isolate GFL073 mRNA sequence, sequence.
MW082292.1:658-677

ACGACGACGACGAAGGAGAGGAGGATGACG658ATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATGAC

Chionomys nivalis genome assembly, chromosome: 17.
OX465465.1:9154793-9154812

GTGTGAAACTTATATACCCATGTGTACAAC9154793TGAGTGAAGAACCTGCACATGCGTGTGGAGAGAGAAAAAAACAATAATAA

GH_RMIRS_012_C01_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW478080.1:292-311

GTCATCAGCTATCAGGACAGGAGGACCGGA292TGAGTGAAGAACCTGCACATCGTCATCCTATCTTCGCCTTCATCATCCTC

Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:58264197-58264216

GTCATCAGCTATCAGGACAGGAGGACCGGA58264197TGAGTGAAGAACCTGCACATCGTCATCCTCCTCTCCTTCGTCGTCGTCGT

Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:123576716-123576735

GTCATCAGCTATCAGGACAGGAGGACCGGA123576716TGAGTGAAGAACCTGCACATCGTCATCCTCCTCTCCTTCGTCGTCGTCGT

Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:196904071-196904090

GTCATCAGCTATCAGGACAGGAGGACCGGA196904071TGAGTGAAGAACCTGCACATCGTCATCCTCCTCTCCTTCGTCGTCGTCTT

Gossypium herbaceum clone NBRI_C_7997 simple sequence repeat marker, mRNA sequence.
HQ527564.1:233-252

GTCATCAGCTATCAGGACAGGAGGACCGGA233TGAGTGAAGAACCTGCACATCGTCATCCTCCTCTCCGTCGTCGTCGTCGT

Gossypium herbaceum clone NBRI_C2_1045 simple sequence repeat marker, mRNA sequence.
HQ527566.1:8-27

AACCGGA8TGAGTGAAGAACCTGCACATCGTCATCCTCCTCTCCGNTCGTCGTCGTCG

Ricordea florida genome assembly, chromosome: 14.
OX453285.1:12049363-12049382

AAATAAGCCAGTTTTTCCATCTAAATAATT12049363TGAGTGAAGAACCTGCACATGGCGAGGACAACTTTGATAGGCTGTACAAA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
2.921 | 2.912 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTGCAGGTTCTTCACTCA&k=0&no_gap=0&offset=0&limit=50
3.061 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGTGAAGAACCTGCACAT&k=0&no_gap=0&offset=0&limit=8
3.066 | 0.005 | cgi_end;

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