GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:25:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 71 unordered pieces.
FJ789647.1:59186-59205
CAATCAAGGAAAAGAGAAACGACGGTGGTG59186ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
AC189221.2:48260-48279
CAATCAAGGAAAAGAGAAACGACGGTGGTG48260ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:10626398-10626417
CAATCAAGAAAAAGAGAAACGACGGTGGTG10626398ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:12747095-12747114
ATCAAGAAAAAAAGAGAAACGACGGTGGTG12747095ATTCACGAGGAATGACGTGTAACGCCAGCTGTCTATCAGAGAGAGGCGCA
Draba incana genome assembly, chromosome: 15.
OY755216.1:4634478-4634497
CAATCAACAAAAAGAGAAGCGACGGTGTTG4634478ATTCACGAGGAATGACGTGTGATGACAGCTGTCGAAAGGAGTGAGGTGCA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2705537-2705556
TGCGCCTCTCTTTGATGGACAGCTGGCGTT2705537ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 92 unordered pieces.
FJ789644.1:913836-913855
TGCGCCTCTCTTTGATGGACAGCTGGCGTT913836ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:60993237-60993256
TGCGCCTCTCTTTGATGGACAGCTGGCGTT60993237ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:44813813-44813832
TGCGCCTCTCTTTGATGGACAGCTGGCGTT44813813ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:31138583-31138602
TGCGCCTCTCTTTGATGGACAGCTGGCGTT31138583ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica rapa genome, scaffold: A09.
LR031568.1:49123339-49123358
TGCGCCTCTCTTTGATGGACAGCTGGCGTT49123339ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:40423048-40423067
TGCGCCTCTCTTTGATGGACAGCTGGCGTT40423048ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:59595417-59595436
TGCGCCTCTCTTTGATGGACAGCTGGCGTT59595417ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Arabis alpina genome assembly, chromosome: 5.
LT669792.1:24738160-24738179
ACCTCTCTTTGATCGACAGCTGTCATCATC24738160ACACGTCATTCCTCGTGAATCGCTACCGTCGCTTTTCTTTTTTCTTGATT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:31285855-31285874
TGCGCCTCTCTCTGATAGACAGCTGGCGTT31285855ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTTTCTTGAT
Draba incana genome assembly, chromosome: 16.
OY755217.1:29183561-29183580
TGCACCTCTCTCCTTTCGACAGCTGTCATC29183561ACACGTCATTCCTCGTGAATCAACACCGTCGCTTCTCTTTTTGTTGATTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTCACGAGGAATGACGTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCACGAGGAATGACGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCACGAGGAATGACGTGT&k=0&no_gap=0&offset=0&limit=50
0.138 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=ACACGTCATTCCTCGTGAAT&k=0&no_gap=0&offset=0&limit=45
0.145 | 0.007 | cgi_end;

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