GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 12:34:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB080J08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB080J08, genomic survey sequence.
DX070982.1:640-659
GAGAGAGAGCGACTGAAACAATCTTCAGAT640ATTCTTATTTATAGGCCCGCCGAAACAGAGAGGAGGAGGAGGAGGAAAGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34139979-34139998
GAGAGAGAGCGACTGAAACAATCTTCAGAT34139979ATTCTTATTTATAGGCCCGCCGAAACAGAGAGGAGGAGGAAAGAGATTAG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2645581-2645600
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2645581GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:2498794-2498813
CTAATCTCTTTCCTCCTCCTCTCTGTTTCG2498794GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica rapa genome, scaffold: A07.
LR031574.1:2509654-2509673
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2509654GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:2521458-2521477
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2521458GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTCTTATTTATAGGCCCGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCTTATTTATAGGCCCGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.125 | 0.116 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCTTATTTATAGGCCCGC&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=GCGGGCCTATAAATAAGAAT&k=0&no_gap=0&offset=0&limit=48
0.155 | 0.003 | cgi_end;

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