GGGenome | Results

2025-04-13 23:22:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

pOP-CNI01265_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01265 5', mRNA sequence.
EY403602.1:120-143

CGAACACTCTCAGTCAAAGCCGGGAGCCTA120ATTGTCCCAGCTCGAATGACTCGTCCATGGATATGCATTCTGACAGCCCTACTC

pOP-EAP02319_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP02319 5', mRNA sequence.
EY405522.1:559-582

CGAACACTCTCAGTCAAAGCCGGGAGCCTA559ATTGTCCCAGCTCGAATGACTCGTCCATGGATATGCATTCTGACAGCCCTACTC

TSA: Elaeis guineensis EgEfMPOB00191 holocarboxylase synthetase mRNA, complete cds, mRNA sequence.
EU285005.1:584-607

CGAACACTCTCAGTCAAAGCCGGGAGCCTA584ATTGTCCCAGCTCGAATGACTCGTCCATGGATATGCATTCTGACAGCCCTACTC

TSA: Elaeis guineensis isotig08760.Elguifruit mRNA sequence.
JO095990.1:737-760

CGAACACTCTCAGTCAAAGCCGGGAGCCTA737ATTGTCCCAGCTCGAATGACTCGTCCATGGATATGCATTCTGACAGCCCTACTC

Elaeis guineensis clone estEgSNP12 holocarboxylase synthetase (HCS) mRNA, complete cds.
JX438711.1:727-750

CGAACACTCTCAGTCAAAGCCGGGAGCCTA727ATTGTCCCAGCTCGAATGACTCGTCCATGGATATGCATTCTGACAGCCCTACTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.224 | 0.216 | search_plus_done; http://172.18.8.135:50400/match?q=ATTGTCCCAGCTCGAATGACTCGT&k=0&no_gap=0&offset=0&limit=50
0.249 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=ACGAGTCATTCGAGCTGGGACAAT&k=0&no_gap=0&offset=0&limit=45
0.249 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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