GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:55:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ovis canadensis canadensis isolate 43U chromosome 5 sequence.
CP011890.1:13915758-13915777
TAAAAAATGTTTAAAAAGAGAGAAAATCTA13915758ATTTGATAGCCAACGTGACCCATAGTGATATGAGCTTCTTTATAATATTT
Bos mutus isolate yakQH1 chromosome 7.
CP027075.1:14959557-14959576
TAAAACATTTTTAAAAAGAGAGAAAATCTA14959557ATTTGATAGCCAACGTGACCCACAGTGATATGAGCTTCTTTATAATATTT
Capricornis sumatraensis isolate serow.1 chromosome 9.
CP135635.1:16189725-16189744
TAAAAAATGTTTAGAAAGAGAGAAAATCTA16189725ATTTGATAGCCAACGTGACCCACAGTGATATGAGCTTCTTTATAATATTT
Bos taurus genome assembly, chromosome: 7.
LR962765.1:15367729-15367748
TAAAACATTTTTAAAAAGAGAGAAAATCTA15367729ATTTGATAGCCAACGTGACCCACAGTGATATGAGCTTCTTTAGAATATTT
Bos gaurus x Bos taurus genome assembly, chromosome: 7.
OX258961.1:17650649-17650668
TAAAACATTTTTAAAAAGAGAGAAAATCTA17650649ATTTGATAGCCAACGTGACCCACAGTGATATGAGCTTCTTTAGAATATTT
Bos taurus strain mammals genome assembly, chromosome: 7.
OX344696.1:16652786-16652805
TAAAACATTTTTAAAAAGAGAGAAAATCTA16652786ATTTGATAGCCAACGTGACCCACAGTGATATGAGCTTCTTTAGAATATTT
Bos taurus genome assembly, chromosome: Bta07.
OY997235.1:16545389-16545408
TAAAACATTTTTAAAAAGAGAGAAAATCTA16545389ATTTGATAGCCAACGTGACCCACAGTGATATGAGCTTCTTTAGAATATTT
1098268382337 CHORI-243 Ovis aries genomic clone CH243-92A22, genomic survey sequence.
DU352200.1:233-252
TAAAAAATGTTTAAAAAGAGAGAAAATCTA233ATTTGATAGCCAACGTGACCCATAGTGATATGAGCTTCTTTATAATATTT
Jasminum sambac cultivar Hutoumoli linkage group Lg1.
CP073640.1:20857584-20857603
ATTAATTTCTTTGTGGAGATTTCATGTAAC20857584ATTTGATAGCCAACGTGACCCAACCGAGCATGCCAAAGAGAAGCGCCAAA
Jasminum sambac cultivar Hutoumoli linkage group Lg5.
CP073648.1:1082551-1082570
ATTAATTTCTTTGTGGAGATTTCATGTAAC1082551ATTTGATAGCCAACGTGACCCAACCGAGCATGCCAAAGAGAAGCACTCAA
Brassica rapa genome, scaffold: A10.
LR031577.1:12501610-12501629
CCGTCCTCGCTTGGGGCAATTCTCTAGGCG12501610ATTTGATAGCCAACGTGACCGTGGCGGTCCATGGAGGCAAGGACGGTGCG
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:15257945-15257964
CCGTCCTCGCTTGGGGCAATTCTCTAGGCG15257945ATTTGATAGCCAACGTGACCGTGGCGGTCCATGGAGGCAAGGACGGTGCG
Bos taurus genome assembly, chromosome: 7.
LR962890.1:94180894-94180913
AAATATTCTAAAGAAGCTCATATCACTGTG94180894GGTCACGTTGGCTATCAAATTAGATTTTCTCTCTTTTTAAAAATGTTTTA
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF38D18, 3'-end sequence.
FY425663.1:391-410
CGCACCGTCCTTGCCTCCATGGACCGCCAC391GGTCACGTTGGCTATCAAATCGCCTAGAGAATTGCCCCAAGCGAGGACGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_28269.
FX715538.1:261-280
CGCACCGTCCTTGCCTCCATGGACCGCCAC261GGTCACGTTGGCTATCAAATCGCCTAGAGAATTGCCCCAAGCGAGGACGG
Bos taurus clone CH240-521G6, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC182261.2:144753-144772
AAATATTCTAAAGAAGCTCATATCACTGTG144753GGTCACGTTGGCTATCAAATTAGATTTTCTCTCTTTTTAAAAATGTTTTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB015N02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189238.2:24532-24551
CGCACCGTCCTTGCCTCCATGGACCGCCAC24532GGTCACGTTGGCTATCAAATCGCCTAGAGAATTGCCCCAAGCGAGGACGG
Bos taurus clone CH240-228P19, WORKING DRAFT SEQUENCE, 46 unordered pieces.
AC218114.1:295326-295345
AAATATTCTAAAGAAGCTCATATCACTGTG295326GGTCACGTTGGCTATCAAATTAGATTTTCTCTCTTTTTAAAAATGTTTTA
Brassica rapa subsp. pekinensis clone KBrH081M22, complete sequence.
CU695315.1:81820-81839
CGCACCGTCCTTGCCTCCATGGACCGCCAC81820GGTCACGTTGGCTATCAAATCGCCTAGAGAATTGCCCCAAGCGAGGACGG
Jasminum sambac cultivar Hutoumoli linkage group Lg9.
CP073652.1:1333227-1333246
TTGAGCGCTTCTCTTTGGCATGCTCGGTTG1333227GGTCACGTTGGCTATCAAATGTTACATGAAATCTCCACAAAGAAATTAAT
Jasminum sambac cultivar Hutoumoli linkage group Lg9.
CP073652.1:31220144-31220163
TTGAGTGCTTCTCTTTGGCATGCTCGGTTG31220144GGTCACGTTGGCTATCAAATGTTACATGAAATCTCCACAAAGAAATTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTTGATAGCCAACGTGACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTGATAGCCAACGTGACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.141 | 0.133 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTGATAGCCAACGTGACC&k=0&no_gap=0&offset=0&limit=50
0.250 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCACGTTGGCTATCAAAT&k=0&no_gap=0&offset=0&limit=38
0.256 | 0.006 | cgi_end;

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