GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:54:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2016533752-A/283288: OLIGONUCLEOTIDE PROBES AND USES THEREOF.
LV237890.1:5-24
TTAA5CAAACTCACAAACGATCCAATCCACA
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:1030342-1030361
AAAATTAAATTCACAAAACGACTCCAAAAA1030342CAAACTCACAAACGATCCAATAATTACTAAATCTGTGATATCGAAAAAAA
Ischnura elegans genome assembly, chromosome: 3.
OV121102.1:36452427-36452446
TGATTATTAAATTATAATCACAATAATCAG36452427CAAACTCACAAACGATCCAAGAAAGATAAGCAACTGTCTTCAGTATTGGC
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:15082704-15082723
GTTTTTTCGATATCACAGATTTAGTAATTA15082704TTGGATCGTTTGTGAGTTTGTTTTTGTAGTCGTTTTGTGAATTTAGGTAG
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:15640911-15640930
GTTTTTTCGATATCACAGATTTAGTAATTA15640911TTGGATCGTTTGTGAGTTTGTTTTTGTAGTCGTTTTGTGAATTTAGGTAG
Fagus sylvatica genome assembly, chromosome: 6.
OU015766.1:21508250-21508269
TGTCCAAAAAAAAAAAAAACTACTTAAATT21508250TTGGATCGTTTGTGAGTTTGAGTATATATGAGAGAGAGAGAGTATTTTGT
Juncus effusus genome assembly, chromosome: 4.
OX326977.1:4069437-4069456
GAAGGCGGGAAGAATGAAAATGGAATGAGT4069437TTGGATCGTTTGTGAGTTTGGTTTGGGATTGTCGCGCCGCGCTAAATTCT
1_Tdi_b3v08.
OA564667.1:9035-9054
ATCGCAACTAAAATAAAATTAAATAATATA9035TTGGATCGTTTGTGAGTTTGGTAAATTTCACTGCACGCTTTAAATCGAAG
1_Tps_b3v08.
OD003453.1:33319-33338
ATCGCAACTAAAATAAAATAAAATAATATA33319TTGGATCGTTTGTGAGTTTGGTAAATTTCACTGCACGCTTTAAATCGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAACTCACAAACGATCCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAACTCACAAACGATCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=CAAACTCACAAACGATCCAA&k=0&no_gap=0&offset=0&limit=50
0.224 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGATCGTTTGTGAGTTTG&k=0&no_gap=0&offset=0&limit=47
0.228 | 0.004 | cgi_end;

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