GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:26:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Lactuca serriola Serrassy_T_P2_13722 mRNA sequence.
JO024775.1:1072-1094
CAAAGTCTATATTACCCTTCAAAACCGCAT1072CAAATATTCCCTGTTGTGTTTCAGCCCAAAATGGAGGTACACCGCTTAAAAGA
TSA: Capsicum annuum MGMT_Contig2594, mRNA sequence.
JW052838.1:1172-1194
CAAAATCAATGTGCCCTTTCAGAACTGCAT1172CAAATATTCCCTGTTGTGTTTCAGCCCAAAATGGCGGCACACCACTTAGCAGT
TSA: Capsicum annuum CMCs80_8146, mRNA sequence.
JW115420.1:1212-1234
CAAAATCAATGTGCCCTTTCAGAACTGCAT1212CAAATATTCCCTGTTGTGTTTCAGCCCAAAATGGCGGCACACCACTTAGCAGT
TSA: Capsicum annuum EJ_MegaContig_1849, mRNA sequence.
JW128945.1:1190-1212
CAAAATCAATGTGCCCTTTCAGAACTGCAT1190CAAATATTCCCTGTTGTGTTTCAGCCCAAAATGGCGGCACACCACTTAGCAGT
TSA: Fagopyrum esculentum Unigene13742_laojing mRNA sequence.
JW675087.1:235-257
CAAAGTCAATGTGCCCTTCTAGAACCGCAT235CAAATATTCCCTGTTGTGTTTCAGCCCAAAACGGGGGCACACCACTTAGCAAT
CCEL13468.b1_G07.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL13468, mRNA sequence.
EL371450.1:477-499
ACTTTTAAGCGGCGTACCTCCATTTTGGGC477TGAAACACAACAGGGAATATTTGATGCGGTTTTGAAGGGCAATATAGACTTTG
CCHT2299.b1_F24.ab1 CCHT Niger Seed Guizotia abyssinica cDNA clone CCHT2299, mRNA sequence.
GE565139.1:320-342
ACTGTTAAGCGGTGTACCTCCATTTTGGGC320TGAAACACAACAGGGAATATTTGATGCCGTTTTGAAGGGAAATCTTGACTTTG
TSA: Lactuca sativa Letassy_X1_1169 mRNA sequence.
JI577532.1:1177-1199
TCTTTTAAGCGGTGTACCTCCATTTTGGGC1177TGAAACACAACAGGGAATATTTGATGCGGTTTTGAAGGGTAATATAGACTTTG
TSA: Silene latifolia Sl_contig15276 mRNA sequence.
JO773311.1:1158-1180
TTTGCTCAGTGGTGTACCTCCATTTTGGGC1158TGAAACACAACAGGGAATATTTGATGAAGTTTTGAAGGGTCAGATTGACTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAATATTCCCTGTTGTGTTTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAATATTCCCTGTTGTGTTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.147 | 0.138 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATATTCCCTGTTGTGTTTCA&k=0&no_gap=0&offset=0&limit=50
0.318 | 0.171 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAACACAACAGGGAATATTTG&k=0&no_gap=0&offset=0&limit=45
0.321 | 0.003 | cgi_end;

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