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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 19:34:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pisum sativum Ps_contig_mira-ass_123745 mRNA sequence.
JI977864.1:36-63
TCCAGTGTTGAGCACACGCCACCCTTCTAA36CAACACCTTCAGTAGCATCCATAGCAATAGTTCTGACAACGCCCTCGCCCAAATGCTG
TSA: Medicago sativa cultivar Chilean F0D_368 mRNA sequence.
JL866823.1:1635-1662
AACCAGTGTTGAGAACTCTCCATCCACGAA1635CAACACCTTCAGTAGCATCCATAGCAATGGTTCTCACAACACCTTCACCCAAATGCTG
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_9011 mRNA sequence.
JL890189.1:1634-1661
AACCAGTGTTGAGAACTCTCCATCCACGAA1634CAACACCTTCAGTAGCATCCATAGCAATGGTTCTCACAACACCTTCACCCAAATGCTG
Medicago truncatula clone mth2-10n2, complete sequence.
AC144342.26:127799-127826
GAATCAAATAAATTGAATAGATGGTTCTCA127799CAACACCTTCAGTAGCATCCATAGCAATGGTTCTCACAACACCTTCACCCAAATGCTG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-20.
CP023132.1:3139574-3139601
ATCCGGTGTTGAGCACGCGCCATCCTCTAA3139574CAACACCTTCAGTAGCATCCATAGCAATAGTTCTGACAACGCCCTCACCCAAATGTTG
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:63543946-63543973
ATCCAGTGTTGAGCACGCGCCATCCTCTAA63543946CAACACCTTCAGTAGCATCCATAGCAATAGTTCTCACAACACCTTCACCCAAATGCTG
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:62892688-62892715
ATCCAGTGTTGAGCACGCGCCATCCTCTAA62892688CAACACCTTCAGTAGCATCCATAGCAATAGTTCTCACAACACCTTCACCCAAATGCTG
M.truncatula DNA sequence from clone MTH2-144G2 on chromosome 3.
CU062643.7:41268-41295
GAATCAAATAAATTGAATAGATGGTTCTCA41268CAACACCTTCAGTAGCATCCATAGCAATGGTTCTCACAACACCTTCACCCAAATGCTG
Medicago arabica genome assembly, chromosome: 2.
OX326965.1:63156714-63156741
AACCGGTGTTAAGAACACGCCATCCACGAA63156714CAACACCTTCAGTAGCATCCATAGCAATCGTTCTCACAACACCTTCACCCAAATGCTG
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:53447422-53447449
ATCCAGTGTTGAGCACGCGCCATCCTCTAA53447422CAACACCTTCAGTAGCATCCATAGCAATGGTTCTCACAATACCTTCTCCCAAATGCTG
Sequence 6968 from Patent WO2009037279.
GN102187.1:431-458
GCGCAATTTGGGCGAGGGCGTGTCAGAACT431ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGGTGGCGTGTGCTCAACACTGGAT
Sequence 6968 from patent US 8664475.
HK290186.1:431-458
GCGCAATTTGGGCGAGGGCGTGTCAGAACT431ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGGTGGCGTGTGCTCAACACTGGAT
00440 MtRHE Medicago truncatula cDNA 5' similar to ATP synthase beta chain, mitochondrial, mRNA sequence.
AA660554.1:206-233
CAGCATTTGGGTGAAGGTGTTGTGAGAACG206ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
00538 MtRHE Medicago truncatula cDNA 5' similar to ATP synthase beta chain, mRNA sequence.
AA660650.1:113-140
CAGCATTTGGGTGAAGGTGTTGTGAGAACG113ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
00566 MtRHE Medicago truncatula cDNA 5' similar to ATP synthase beta chain, mRNA sequence.
AA660677.1:212-239
CAGCATTTGGGTGAAGGTGTTGTGAGAACG212ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
00820 MtRHE Medicago truncatula cDNA 5' similar to mitochondrial ATP synthase beta-subunit, mRNA sequence.
AA660923.1:427-454
AGCATTTGGGTTGAAGGTGTTGTGAGAACG427ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
T113063e KV2 Medicago truncatula cDNA clone pKV2-1C20, mRNA sequence.
AI974613.1:129-156
CAGCATTTGGGTGAAGGTGTTGTGAGAACG129ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
Medicago truncatula EST MtBA31A04F1 : T3 end of clone MtBA31A04 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL369422.1:92-119
AGCATTTCCGTGAAGGTCCCTGTGAGAACG92ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST305222 KV2 Medicago truncatula cDNA clone KV2-6P4, mRNA sequence.
AW257085.1:418-445
CAGCATTTGGGTGAAGGTGTTGTGAGAACG418ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST316335 GVN Medicago truncatula cDNA clone pGVN-48O23, mRNA sequence.
AW573744.1:411-438
CAGCATTTGGGTGAAGGTGTTGTGAGAACG411ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF008G01ST1F1000 Developing stem Medicago truncatula cDNA clone NF008G01ST 5', mRNA sequence.
AW688535.2:364-391
CAGCATTTGGGTGAAGGTGTTGTGAGAACG364ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF049F04ST1F1042 Developing stem Medicago truncatula cDNA clone NF049F04ST 5', mRNA sequence.
AW692282.2:397-424
CAGCATTTGGGTGAAGGTGTTGTGAGAACG397ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF064H03ST1F1000 Developing stem Medicago truncatula cDNA clone NF064H03ST 5', mRNA sequence.
AW693415.2:435-462
CAGCATTTGGGTGAAGGTGTTGTGAGAACG435ATTGCTATGGATGCTACTGAAGGTGTTGTTTCGTGGATGGCGTGTTCTTAACACCGGT
NF068D08ST1F1073 Developing stem Medicago truncatula cDNA clone NF068D08ST 5', mRNA sequence.
AW693723.1:436-463
CAGCATTTGGGTGAAGGTGTTGTGAGAACG436ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF071E02ST1F1017 Developing stem Medicago truncatula cDNA clone NF071E02ST 5', mRNA sequence.
AW694010.2:310-337
CAGCATTTGGGTGAAGGTGTTGTGAGAACG310ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF080D07ST1F1061 Developing stem Medicago truncatula cDNA clone NF080D07ST 5', mRNA sequence.
AW694826.2:234-261
CAGCATTTGGGTGAAGGTGTTGTGAGAACG234ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF106F02ST1F1025 Developing stem Medicago truncatula cDNA clone NF106F02ST 5', mRNA sequence.
AW696473.2:51-78
CAGCATTTGGGTGAAGGTGTTGTGAGAACG51ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST392056 GVN Medicago truncatula cDNA clone pGVN-60E11, mRNA sequence.
AW980903.1:336-363
CAGCATTTGGGTGAAGGTGTTGTGAGAACG336ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST398011 KV0 Medicago truncatula cDNA clone pKV0-21G10, mRNA sequence.
BE205335.1:87-114
CAGCATTTGGGTGAAGGTGTTGTGAGAACG87ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF063B10IN1F1079 Insect herbivory Medicago truncatula cDNA clone NF063B10IN 5', mRNA sequence.
BF642435.1:424-451
CANCATTTGGGTGAAGGTGTTGTGAGAACG424ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF055G01EC1F1006 Elicited cell culture Medicago truncatula cDNA clone NF055G01EC 5', mRNA sequence.
BF649146.1:224-251
CAGCATTTGGGTGAAGGTGTTGTGAGAACG224ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
NF037C01PL1F1002 Phosphate starved leaf Medicago truncatula cDNA clone NF037C01PL 5', mRNA sequence.
BG457861.1:395-422
CAGCATTTGGGTGAAGGTGTTGTGAGAACG395ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST484812 GVN Medicago truncatula cDNA clone pGVN-71F1 5' end, mRNA sequence.
BG583062.1:302-329
CAGCATTTGGGTGAAGGTGTTGTGAGAACG302ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST485794 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-14E8 5' end, mRNA sequence.
BG584034.1:427-454
CAGCATTTGGGTGAAGGTGTTGTGAGAACG427ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST485811 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-14I8 5' end, mRNA sequence.
BG584051.1:431-458
CAGCATTTGGGTGAAGGTGTTGTGAGAACG431ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST486183 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-15F5 5' end, mRNA sequence.
BG584423.1:412-439
CAGCATTTGGGTGAAGGTGTTGTGAGAACG412ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST487773 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-41M3 5' end, mRNA sequence.
BG586008.1:158-185
CAGCATTTGGGTGAAGGTGTTGTGAGAACG158ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST488789 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-47D4 5' end, mRNA sequence.
BG587020.1:410-437
CAGCATTTGGGTGAAGGTGTTGTGAGAACG410ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST506547 KV3 Medicago truncatula cDNA clone pKV3-38B22 5' end, mRNA sequence.
BG644928.1:189-216
CAGCATTTGGGTGAAGGTGTTGTGAGAACG189ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST531100 GPOD Medicago truncatula cDNA clone pGPOD-13H10 5' end, mRNA sequence.
BI309690.1:423-450
CAGCATTTGGGTGAAGGTGTTGTGAGAACG423ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST531102 GPOD Medicago truncatula cDNA clone pGPOD-13H14 5' end, mRNA sequence.
BI309692.1:420-447
CAGCATTTGGGTGAAGGTGTTGTGAGAACG420ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST5314155 GESD Medicago truncatula cDNA clone pGESD17P12 5' end, mRNA sequence.
BI312405.1:25-52
TTGGGTGAAGGTGTTGTGAGAACG25ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
MTNAC52TKM KVKC Medicago truncatula cDNA clone pKVKC-3E4, mRNA sequence.
BQ255212.1:136-163
CAGCATTTGGGTGAAGGTGTTGTGAGAACG136ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
E590_F -P normal and proteoid roots 7 and 10 DAE Lupinus albus cDNA clone E590 5', mRNA sequence.
CA411294.1:351-378
CAGCATTTGGGTGAGGGTGTTGTCAGAACT351ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTCCTCAACACCGGAT
EST642129 GPOD Medicago truncatula cDNA clone GPOD-37L18, mRNA sequence.
CA917982.1:427-454
CAGCATTTGGGTGAAGGTGTTGTGAGAACG427ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST642311 GPOD Medicago truncatula cDNA clone GPOD-38O12, mRNA sequence.
CA918164.1:434-461
CAGCATTTGGGTGAAGGTGTTGTGAGAACG434ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
EST642486 GPOD Medicago truncatula cDNA clone GPOD-39E11, mRNA sequence.
CA918339.1:421-448
CAGCATTTGGGTGAAGGTGTTGTGAGAACG421ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGGT
s13dLA64B11RT047_529301 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG093265.1:440-467
CAGCATTTGGGTGAGGGTGTTGTCAGAACT440ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTCCTCAACACCGGAT
s13dLA72A02RT008_530177 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG093703.1:444-471
CAGCATTTGGGTGAGGGTGTTGTCAGAACT444ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTCCTCAACACCGGAT
Trifolium repens mRNA, clone: WCC06l03_046, unspecified EST.
FY456305.1:402-429
CAGCATTTGGGTGAAGGTGTTGTGAGAACT402ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGAT
Trifolium repens mRNA, clone: WCC12n20_024, unspecified EST.
FY458464.1:403-430
CAGCATTTGGGTGAAGGTGTTGTGAGAACT403ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGAT
Trifolium repens mRNA, clone: WCC15b15_034, unspecified EST.
FY459236.1:389-416
CAGCATTTGGGTGAAGGTGTTGTGAGAACT389ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGAT
TSA: Pisum sativum Ps_contig_mira-ass_129 mRNA sequence.
JI896984.1:468-495
CAGCATTTGGGCGAGGGCGTTGTCAGAACT468ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGGTGGCGTGTGCTCAACACTGGAT
TSA: Pisum sativum Ps_contig_mira-ass_3373 mRNA sequence.
JI900207.1:402-429
CAGCATTTGGGCGAGGGCGTTGTCAGAACT402ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGGTGGCGTGTGCTCAACACTGGAT
TSA: Pisum sativum contig00925.PisaPYK9 mRNA sequence.
JR951658.1:446-473
CAGCATTTGGGCGAGGGCGTTGTCAGAACT446ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGGTGGCGTGTGCTCAACACTGGAT
mte1-85J23FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR350566.1:426-453
CAGCATTTGGGTGAAGGTGTTGTGAGAACC426ATTGCTATGGATGCTACTGAAGGTGTTGTGAGAACCATCTATTCAATTTATTTGATTC
Medicago truncatula clone mth2-176a24, WORKING DRAFT SEQUENCE, 3 ordered pieces.
AC225469.8:112664-112691
CAGCATTTGGGTGAAGGTGTTGTGAGAACG112664ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
Pisum sativum F1 ATPase mRNA for F1 ATPase, complete cds.
AB003549.1:431-458
GCGCAATTTGGGCGAGGGCGTGTCAGAACT431ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGGTGGCGTGTGCTCAACACTGGAT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-04.
CP023116.1:26805940-26805967
CAACATTTGGGTGAGGGCGTTGTTAGAACT26805940ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACCGGAT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-08.
CP023120.1:6812459-6812486
CAGCATTTGGGTGAGGGTGTTGTCAGAACT6812459ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGAT
Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:2094198-2094225
CAGCATTTGGGTGAAGGTGTTGTGAGAACT2094198ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAATACTGGAT
Medicago lupulina genome assembly, chromosome: 3.
OY283141.1:3376186-3376213
CAGCATTTGGGTGAAGGTGTTGTGAGAACG3376186ATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGCGTGTTCTTAACACCGGTT
Lathyrus sativus genome assembly, chromosome: 3.
OZ012737.1:177067275-177067302
CAGCATTTGGGCGAGGGCGTTGTCAGAACT177067275ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGTGTGCTCAACACTGGAT
Lathyrus aphaca genome assembly, chromosome: 2.
OZ014520.1:28084282-28084309
CAGCATTTGGGAGAGGGCGTTGTCAGAACT28084282ATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGTGTGCTCAACACTGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAACACCTTCAGTAGCATCCATAGCAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACACCTTCAGTAGCATCCATAGCAAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.117 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=CAACACCTTCAGTAGCATCCATAGCAAT&k=0&no_gap=0&offset=0&limit=50
0.955 | 0.838 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGCTATGGATGCTACTGAAGGTGTTG&k=0&no_gap=0&offset=0&limit=40
0.990 | 0.035 | cgi_end;

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