GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:54:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Costus pictus Locus_2407_Transcript_1/2.Copileaf mRNA sequence.
JW233694.1:303-322
CCAAACGAGACCGAATCCAAGTCCAGCACT303CAACAGCCTGGTAGCAGACAAAGGTGCCCTCCCGCATGCAAGTTTGCACA
Musa troglodytarum cultivar karat chromosome 10.
CP097503.1:22203240-22203259
CCAGAAAAGGCCAAATCCAAACCCGGTATT22203240CAACAGCCTGGTAGCAGACAAAGGTACCCTTCCACATACCAGTTTGCATA
Musa acuminata subsp. malaccensis isolate AA chromosome 11.
CP126380.1:34062437-34062456
AAATCCAAATCCAAATCCGAATCCGGTATT34062437CAACAGCCTGGTAGCAGACAAAGGTACCCTTCCACATACCAGTTTGCATA
Musa acuminata subsp. malaccensis isolate AA chromosome 22.
CP126391.1:33473294-33473313
AAATCCAAATCCAAATCCGAATCCGGTATT33473294CAACAGCCTGGTAGCAGACAAAGGTACCCTTCCACATACCAGTTTGCATA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A11.
HG996475.1:33873554-33873573
AAATCCAAATCCAAATCCGAATCCGGTATT33873554CAACAGCCTGGTAGCAGACAAAGGTACCCTTCCACATACCAGTTTGCATA
Musa schizocarpa genome assembly, chromosome: S11.
LS990925.1:36167838-36167857
AAATCCAAATCCAAATCCAAATCCGGTATT36167838CAACAGCCTGGTAGCAGACAAAGGTACCCTTCCACATACCAGTTTGCATA
MAC4-56I05 MA4LIMFES Musa acuminata cDNA clone MAC4-56I05 5', mRNA sequence.
JK538097.1:152-171
TATGCAAACTGGTATGTGGAAGGGTACCTT152TGTCTGCTACCAGGCTGTTGAATACCGGATTCGGATTTGGATTTGGATTT
TSA: Musa acuminata AAA Group Unigene720_B1 mRNA sequence.
JV321244.1:200-219
TATGCAAACTGGTATGTGGAAGGGTACCTT200TGTCTGCTACCAGGCTGTTGAATACCGGATTTGGATTTGGATTTGGATTT
TSA: Musa acuminata AAA Group Unigene19255_NK1 mRNA sequence.
JV415809.1:1056-1075
TATGCAAACTGGTATGTGGAAGGGTACCTT1056TGTCTGCTACCAGGCTGTTGAATACCGGATTTGGATTTGGATTTGGATTT
MAMAO37TF MA4 Musa acuminata genomic clone MA4-7G1, genomic survey sequence.
DX453954.1:722-741
TATGCAAACTGGTATGTGGAAGGGTACCTT722TGTCTGCTACCAGGCTGTTGAATAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAACAGCCTGGTAGCAGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACAGCCTGGTAGCAGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=CAACAGCCTGGTAGCAGACA&k=0&no_gap=0&offset=0&limit=50
0.287 | 0.174 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCTGCTACCAGGCTGTTG&k=0&no_gap=0&offset=0&limit=44
0.290 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).