GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:23:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene37228_XinShao mRNA sequence.
JR629463.1:1258-1277
TCTTGGAATACAATCACAGCGATGCTCCGC1258CAACGTCAATGCATGTAATCAACTTTGT
Antitrichia curtipendula genome assembly, chromosome: 10.
OX579642.1:11539068-11539087
TTCTTGGAATATAATTCATGTGAAGATATA11539068CAACGTCAATGCATGTAATCGATATTGTTATGACAATCTATTTTCAAGTA
Antitrichia curtipendula genome assembly, chromosome: 10.
OX579642.1:11755632-11755651
TTCTTGGAATATAATTCATGTGAAGGTATA11755632CAACGTCAATGCATGTAATCGATATTGTTATGGCAATCTATTTTCAAGTA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5371923-5371942
CGTTTTATGAATAATTTGGAGAACAAAGTT5371923GATTACATGCATTGACGTTGGCGGAGCATCGCTGTGATTGTATTCTAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAACGTCAATGCATGTAATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACGTCAATGCATGTAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=CAACGTCAATGCATGTAATC&k=0&no_gap=0&offset=0&limit=50
0.119 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=GATTACATGCATTGACGTTG&k=0&no_gap=0&offset=0&limit=47
0.120 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).