GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:36:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH104J14R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH104J14, genomic survey sequence.
DU128237.1:121-141
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT121CAAGATTGTCCACATATAGCGTGAGTAGTCAGAGAACAAATACATATTTCT
KBrB129J04F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB129J04, genomic survey sequence.
ED536623.1:530-550
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT530CAAGATTGTCCACATATAGCGTGAGTAGTCAGAGAACAAATACATATTTCT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:1792611-1792631
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT1792611CAAGATTGTCCACATATAGCGTGAGTAGTCAGAGAACAAATACATATTTCT
Brassica rapa genome, scaffold: A07.
LR031574.1:1763659-1763679
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT1763659CAAGATTGTCCACATATAGCGTGAGTAGTCATCAATGAGAACAAATACATA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:1774564-1774584
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT1774564CAAGATTGTCCACATATAGCGTGAGTAGTCATCAATGAGAACAAATACATA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34687794-34687814
AGAAATATGTATTTGTTCTCTGACTACTCA34687794CGCTATATGTGGACAATCTTGATTAAAGAAAAGAGTGAGGCTTTTGAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGATTGTCCACATATAGCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGATTGTCCACATATAGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.145 | 0.136 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGATTGTCCACATATAGCG&k=0&no_gap=0&offset=0&limit=50
0.164 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CGCTATATGTGGACAATCTTG&k=0&no_gap=0&offset=0&limit=45
0.165 | 0.001 | cgi_end;

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