GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:31:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Porphyra yezoensis cDNA clone:PS009g10_r, 5' end.
AV436754.1:417-436
CCCAGGCCGCTGGCGCACTGGGTGGTGTGC417CAAGCCGTCAGTCTTCCTTCCTTCTTCGC
Porphyra yezoensis cDNA clone:PS028g09_r, 5' end.
AV437934.1:264-283
CCCAGGCCGCTGGCGCACTGGGTGGTGTGC264CAAGCCGTCAGTCTTCCTTCCTTCTTCGCTTCGAGTTTTGAGTGTGTGTG
Porphyra yezoensis cDNA clone:PS037a09_r, 5' end.
AV438499.1:480-499
CCCAGGCCGCTGGCGCACTGGGTGGTGTGC480CAAGCCGTCAGTCTTCCTTCCTTCTTCGCTTCGAGTTTTGAGTGTGTG
py086 PY Sporophyte cDNA Library Pyropia yezoensis cDNA, mRNA sequence.
CX873937.1:60-79
CCCAGGCCGCTGGCGCACTGGGTGGTGTGC60CAAGCCGTCAGTCTTCCTTCCTTCTTCGCTTCGAGTTTTGAGTGTGTGTG
Diaphorobacter sp. HDW4A chromosome, complete genome.
CP049910.1:5180044-5180063
CGTGGGGCTGAGGCACGCGTTTTGATGCGT5180044CAAGCCGTCAGTCTTCCTTCATCCCTGTGGCCTTCACCACCTCGCCAAGC
Salmo trutta genome assembly, chromosome: 33.
LR584414.1:43632109-43632128
CAGGTACAAACTAGTATCACACTGCTGAGA43632109GAAGGAAGACTGACGGCTTGTCAATGCCGCCTCGGTGTTGGAATGCAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGCCGTCAGTCTTCCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGCCGTCAGTCTTCCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.162 | 0.153 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGCCGTCAGTCTTCCTTC&k=0&no_gap=0&offset=0&limit=50
0.195 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGGAAGACTGACGGCTTG&k=0&no_gap=0&offset=0&limit=45
0.196 | 0.001 | cgi_end;

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