GGGenome | Results

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2025-04-17 10:19:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Manihot esculenta mRNA, clone: CAS01_002_D16, 5'end.
DB920489.1:374-396

ATTTGATGCTGTCATCCACTTTGCTGGGCT374CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

CV02027B1B06.f1 CV02-normalized library Manihot esculenta cDNA clone CV02027B1B06.f1, mRNA sequence.
DV458486.1:405-427

ATTTGATGCTGTCATCCACTTTGCTGGGCT405CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

Y75E11 YLX600 Hevea brasiliensis cDNA clone Y75E11 5', mRNA sequence.
EC600511.1:385-407

ATTTGACTCTGTCATCCACTTTGCTGGGCT385CAAGGCAGTTGGTGAGAGTGTGGAGAAACCGCTGCTTTATTTTGACAACAATC

Y02F06 YLX600 Hevea brasiliensis cDNA clone Y02F06 5', mRNA sequence.
EC606110.1:377-399

ATTTGACTCTGTCATCCACTTTGCTGGGCT377CAAGGCAGTTGGTGAGAGTGTGGAGAAACCGCTGCTTTATTTTGACAACAATC

U_SX-090909_plate58d10.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG969921.1:56-78

ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

U_SX-090916_plate56m08.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG974611.1:56-78

ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

U_SX-PL011N01_A_plate21o23.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG979851.1:56-78

ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

U_SX-PL011N01_A_plate5e12.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG989330.1:56-78

ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

U_UZ-100602_plate13e16.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991644.1:250-272

ATTTGATGCTGTCATCCACTTTGCTGGGCT250CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC

TSA: Hevea brasiliensis contig44237, mRNA sequence.
JT935704.1:397-419

ATTTGACTCTGTCATCCACTTTGCTGGGCT397CAAGGCAGTTGGTGAGAGTGTGGAGAAACCGCTGCTTTATTTTGACAACAATC

TSA: Hevea brasiliensis Unigene21866_HB.Hebrbark mRNA sequence.
JR366046.1:563-585

GATTGTTGTCAAAATAAAGCAATGGTTTCT563CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT

TSA: Hevea brasiliensis contig69909, mRNA sequence.
JT933855.1:1075-1097

GATTGTTGTCAAAATAAAACAATGGTTTCT1075CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT

TSA: Hevea brasiliensis contig40607, mRNA sequence.
JT936203.1:1075-1097

GATTGTTGTCAAAATAAAACAATGGTTTCT1075CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT

TSA: Hevea brasiliensis contig69910, mRNA sequence.
JT936254.1:1075-1097

GATTGTTGTCAAAATAAAGCAATGGTTTCT1075CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.747 | 0.738 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGGCAGTTGGTGAGAGTGTGG&k=0&no_gap=0&offset=0&limit=50
0.848 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=CCACACTCTCACCAACTGCCTTG&k=0&no_gap=0&offset=0&limit=40
0.850 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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