GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:49:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Accipiter gentilis genome assembly, chromosome: 5.
OV839365.1:32326940-32326959
ATGTGGGCGCTAGCTCTGCGACGGGACAAG32326940CAAGTGAACAAGGCCCAAATGATCCCTCCAATCACCAGTCCAACCACCAT
Arachis hypogaea DNA, clone: AHGS46F12.
DH961652.1:204-223
TTACCCCAAAATTGGGCCAACGAGCTAAAA204CAAGTGAACAAGGCCCAAATTGGGTCCAAGGCCCATAACCCAACCCTTAT
Euphrasia confusa genome assembly, chromosome: 1.
OX940949.1:17111158-17111177
TACAGAAGGCCAACAACTTGTATGCAAGCG17111158CAAGTGAACAAGGCCCAAATGAAGATGCCTGGATCAAATGCAAATTGCCG
Plasmodium chabaudi chabaudi strain AS genome assembly, chromosome: 11.
LK022888.2:888261-888280
CTATAAATATTGATACAAATAATGTAAATG888261CAAGTGAACAAGGCCCAAATGAAATAAATAAACAAAGCAATATGGACGAT
Plasmodium vinckei petteri strain CR genome assembly, chromosome: 11.
LR129710.1:893736-893755
CTATAAATATTGATACAAATAATGTAAATG893736CAAGTGAACAAGGCCCAAATGAAATAAATAAACAAAGCAATATGGACGAT
Plasmodium vinckei vinckei strain V52 genome assembly, chromosome: 11.
LR129724.1:890614-890633
CTATAAATATTGATACAAATAATGTAAATG890614CAAGTGAACAAGGCCCAAATGAAATAAATAAACAAAGCAATATGGACGAT
Plasmodium yoelii killicki strain 194ZZ genome assembly, chromosome: 11.
LR129752.1:904151-904170
CCATAAATGTTGATACAAATAATGTAAATG904151CAAGTGAACAAGGCCCAAATGAAATAAGTAAACAAAACAATATGGATGAT
Plasmodium vinckei lentum genome assembly, chromosome: PVLDE_11.
LR865373.1:912584-912603
CCATAAATGTTGATACAAATAATGTAAATG912584CAAGTGAACAAGGCCCAAATGAAATAAGTAAACAAAACAATATGGATGAT
Plasmodium chabaudi chabaudi strain CB genome assembly, chromosome: 11.
LT608163.1:881471-881490
CTATAAATATTGATACAAATAATGTAAATG881471CAAGTGAACAAGGCCCAAATGAAATAAATAAACAAAACAATATGGACGAT
Plasmodium chabaudi chabaudi strain AJ genome assembly, chromosome: 11.
LT608177.1:864137-864156
CTATAAATATTGATACAAATAATGTAAATG864137CAAGTGAACAAGGCCCAAATGAAATAAATAAACAAAGCAATATGGACGAT
Plasmodium chabaudi adami strain DS genome assembly, chromosome: 11.
LT608191.1:864767-864786
CTATAAATATTGATACAAATAATGTAAATG864767CAAGTGAACAAGGCCCAAATGAAATAAATAAACAAAACAATATGGACGAT
Aquila chrysaetos chrysaetos genome assembly, chromosome: 8.
LR606188.1:15350833-15350852
ATGGTGGTTGGACTGGTGATTGGAGGGATC15350833ATTTGGGCCTTGTTCACTTGCTTGTCCCGTCGCAGAGCTAGTGCCCACAT
Haliaeetus albicilla genome assembly, chromosome: 7.
OX381643.1:15159027-15159046
ATGGTGGTTGGACTGGTGATTGGAGGGATC15159027ATTTGGGCCTTGTTCACTTGCTTGTCCCGTCGCAGAGCTAGTGCCCACAT
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:52730038-52730057
ATAAGGGTTGGGTTATGGGCCTTGGACCCA52730038ATTTGGGCCTTGTTCACTTGTTTTAGCTCGTTGGCCCAATTTTGGGGTAA
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:53729555-53729574
ATAAGGGTTGGGTTATGGGCCTTGGACCCA53729555ATTTGGGCCTTGTTCACTTGTTTTAGCTCGTTGGCCCAATTTTGGGGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGTGAACAAGGCCCAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGTGAACAAGGCCCAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.402 | 0.393 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGTGAACAAGGCCCAAAT&k=0&no_gap=0&offset=0&limit=50
0.520 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTGGGCCTTGTTCACTTG&k=0&no_gap=0&offset=0&limit=39
0.523 | 0.003 | cgi_end;

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