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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:16:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Medicago truncatula clone mth2-50o16, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC225499.14:107698-107717
AGTAGAACTGTCAACCGATGAGCAATCAGA107698CAATCCGAGGTAATTGCGTTCCTTCAACCCAGCTGCAGTTTGAGAAAAAC
Medicago arabica genome assembly, chromosome: 5.
OX326968.1:36796637-36796656
AGTAGAACTGTCAACCGATGAGCAATCAGA36796637CAATCCGAGGTAATTGCGTTCTTTCAACCCAGCTGCAGTTTGAGAAAAAC
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:19554077-19554096
AGTAGAACTGTCTACCGATGAGCAATCCGA19554077CAATCCGAGGTAATTGCGTTCTTTTAATCCAGCTCCAGTTTGAGAAAAAC
Trifolium dubium genome assembly, chromosome: 12.
OX638073.1:13615487-13615506
ATTAGAACTGTCCACCGATGAGCAATCTGA13615487CAATCCGAGGTAATTGCGTTCTTTCAATCCAGCTCCAGTTTGAGAAAAAC
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:20390824-20390843
AGTAGAACTGTCCACTGATGAGCAATCCGA20390824CAATCCGAGGTAATTGCGTTCTTTCAATCCAACTCCAGTTTGGGAAAAAC
Sequence 210 from patent US 11352637.
OO264686.1:116-135
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG116AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
00056 MtRHE Medicago truncatula cDNA similar to IAA9; IAA8; auxin inducible gene, mRNA sequence.
AA660215.1:288-307
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG288AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGAAGTTCTACTG
00253 MtRHE Medicago truncatula cDNA 5' similar to IAA8; IAA9; auxin inducible, mRNA sequence.
AA660380.1:234-253
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG234AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
T110250e KV0 Medicago truncatula cDNA clone pKV0-1L12, mRNA sequence.
AI974251.1:325-344
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG325AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTGGACAGTTCTACT
Medicago truncatula EST MtBB34D01F1 : T3 end of clone MtBB34D01 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL377852.1:257-276
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG257AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF006D08ST1F1000 Developing stem Medicago truncatula cDNA clone NF006D08ST 5', mRNA sequence.
AW688353.1:311-330
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG311AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF056H12ST1F1000 Developing stem Medicago truncatula cDNA clone NF056H12ST 5', mRNA sequence.
AW692895.1:247-266
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG247AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF024B10PL1F1078 Phosphate starved leaf Medicago truncatula cDNA clone NF024B10PL 5', mRNA sequence.
BE324633.2:100-119
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG100AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
EST429215 GVSN Medicago truncatula cDNA clone pGVSN-1C22, mRNA sequence.
BE997492.1:302-321
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG302AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
EST433538 DSLC Medicago truncatula cDNA clone pDSLC-31E15, mRNA sequence.
BF005040.1:106-125
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG106AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTGCTACT
NF027D07EC1F1061 Elicited cell culture Medicago truncatula cDNA clone NF027D07EC 5', mRNA sequence.
BF647825.1:245-264
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG245AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF088A09EC1F1067 Elicited cell culture Medicago truncatula cDNA clone NF088A09EC 5', mRNA sequence.
BF650425.1:312-331
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG312AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF109E10EC1F1081 Elicited cell culture Medicago truncatula cDNA clone NF109E10EC 5', mRNA sequence.
BF651258.1:305-324
GTTTTTCTCAAACTGCAGCTGGGTTGNAGG305AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF024D09EC1F1075 Elicited cell culture Medicago truncatula cDNA clone NF024D09EC 5', mRNA sequence.
BG447887.1:311-330
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG311AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
NF050G09PH1F1072 Phoma-infected Medicago truncatula cDNA clone NF050G09PH 5', mRNA sequence.
BQ138175.1:318-337
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG318AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
EST610710 KVKC Medicago truncatula cDNA clone pKVKC-2B2, mRNA sequence.
BQ164841.1:195-214
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG195AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
EST642255 GPOD Medicago truncatula cDNA clone GPOD-38E4, mRNA sequence.
CA918108.1:203-222
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG203AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
EST639298 MTUS Medicago truncatula cDNA clone MTUS-42A9, mRNA sequence.
CA921580.1:576-595
TTTTCTCAAAACTGCAGCTGGGTTGAAGGG576AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
EST645330 GPOD Medicago truncatula cDNA clone GPOD-34E24, mRNA sequence.
CB066707.1:208-227
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG208AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
s13dNF83G06MJ040_257842 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX531951.1:254-273
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG254AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
s13dNF69B08MJ061_272138 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX532929.1:307-326
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG307AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
s13dNF44B07GS061_466232 Germinating Seed Medicago truncatula cDNA, mRNA sequence.
CX541465.1:304-323
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG304AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
MTYD859TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV257458.1:233-252
GTTTTTCTCAAGCTGCAGCTGGGTTGAAGG233AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
MTYD905TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV257495.1:326-345
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG326AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
METAU60TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY476732.1:291-310
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG291AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
Trifolium repens mRNA, clone: WCC30b20, unspecified EST.
FY464540.1:290-309
GTTTTTCCCAAACTGGAGTTGGATTGAAAG290AACGCAATTACCTCGGATTGTCGGATTGCTCATCGGTAGACAGTTCTACT
TSA: Cajanus cajan cultivar UPAS 120 contig28845.UPAS mRNA sequence.
EZ646562.1:273-292
GTTTCTCACCAAATGAGGCAAGATTGAAAG273AACGCAATTACCTCGGATTGTCAGATTGCTCTTCTGTGGACAGTTCTACT
TSA: Cajanus cajan cultivar Asha contig02808.Asha mRNA sequence.
EZ650672.1:311-330
GTTTCTCACCAAATGAGGCAAGATTGAAAG311AACGCAATTACCTCGGATTGTCAGATTGCTCTTCTGTGGACAGTTCTACT
Medicago truncatula clone MTYF5_F6_F7_F81G-D-21 unknown mRNA.
BT051889.1:326-345
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG326AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
Medicago truncatula clone JCVI-FLMt-11P9 unknown mRNA.
BT149832.1:293-312
GTTTTTCTCAAACTGCAGCTGGGTTGAAGG293AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:15770094-15770113
GTTTTTCCCAAACTGGAGTTGGATTGAAAG15770094AACGCAATTACCTCGGATTGTCGGATTGCTCATCGGTAGACAGTTCTACT
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:16266204-16266223
GTTTTTCCCAAACTGGAGTTGGATTGAAAG16266204AACGCAATTACCTCGGATTGTCGGATTGCTCATCGGTAGACAGTTCTACT
Medicago lupulina genome assembly, chromosome: 5.
OY283143.1:25013823-25013842
ACTTTTCTCAAACTGCAGCTGGGTTGAAAG25013823AACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAATCCGAGGTAATTGCGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATCCGAGGTAATTGCGTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.105 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=CAATCCGAGGTAATTGCGTT&k=0&no_gap=0&offset=0&limit=50
0.743 | 0.638 | search_minus_done; http://172.18.8.135:50400/match?q=AACGCAATTACCTCGGATTG&k=0&no_gap=0&offset=0&limit=45
0.764 | 0.021 | cgi_end;

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