GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 07:08:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I08, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC232447.1:67784-67803
GGATCTTATAGCCACGTGATTCGGGTCAAC67784CAATCGGGTCAGAAACCCTACCCAAGACAAACATTGGTTTTTATCACGTG
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:29590294-29590313
GGATCTTATAGCCACGTGGTTCGGGTCGAC29590294CAATCGGGTCAGAAACCCTACCCAAGACAAACATGGGGGTAACTGGGCAG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:18663949-18663968
CACGTGATAAAAACCAATGTTTGTCTTGGG18663949TAGGGTTTCTGACCCGATTGGTTGACCCGAATCACGTGGCTATAAGATCC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:18501068-18501087
CACGTGATAAAAACCAATGTTTGTCTTGGG18501068TAGGGTTTCTGACCCGATTGGTTGACCCGAATCACGTGGCTATAAGATCC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:37062783-37062802
CTGCCCAGTTACCCCCATGTTTGTCTTGGG37062783TAGGGTTTCTGACCCGATTGGTCGACCCGAACCACGTGGCTATAAGATCC
Brassica rapa genome, scaffold: A02.
LR031573.1:17908975-17908994
CACGTGATAAAAACCAATGTTTGTCTTGGG17908975TAGGGTTTCTGACCCGATTGGTTGACCCGAATCACGTGGCTATAAGATCC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:38323780-38323799
CTGCCCAGTTACCCCCATGTTTGTCTTGGG38323780TAGGGTTTCTGACCCGATTGGTCGAGCCGAACCACGTGGCTATAAGATCC
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:17976725-17976744
CACGTGATAAAAACCAATGTTTGTCTTGGG17976725TAGGGTTTCTGACCCGATTGGTTGACCCGAATCACGTGGCTATAAGATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAATCGGGTCAGAAACCCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATCGGGTCAGAAACCCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=CAATCGGGTCAGAAACCCTA&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGGTTTCTGACCCGATTG&k=0&no_gap=0&offset=0&limit=48
0.137 | 0.004 | cgi_end;

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