GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 22:27:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR112349 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-07H04 3', mRNA sequence.
EX128519.1:34-53
GAAAAATAGTTTAAAACGGCGAAAAATAAA34CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA
BR112393 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-08E04 3', mRNA sequence.
EX128563.1:34-53
GAAAAATAGTTTAAAACGGCGAAAAATAAA34CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
AC155342.2:129433-129452
GAAAAATAGTTTAAAACGGCGAAAAATAAA129433CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022F09, complete sequence.
AC240998.1:9172-9191
GAAAAATAGTTTAAAACGGCGAAAAATAAA9172CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA
Ajuga chamaepitys genome assembly, chromosome: 13.
OY282507.1:48150174-48150193
GGAGGCGTTGCTGCAGTGTGAAAATACTAA48150174CAATGATCAGGACTTCAACAAGCATCTAGGCATATGGAAGGTTCTTAGTG
BR031580 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-011C11 5', mRNA sequence.
EX046936.1:225-244
TTTTTTTGGTTTTTTTTTTCTTATAAATAT225TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
BR035893 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-070G01 5', mRNA sequence.
EX051249.1:225-244
TTTTTTTGGTTTTTTTTTTCTTATAAATAT225TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
BR039236 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-138F07 5', mRNA sequence.
EX054592.1:223-242
TTTTTTTGGTTTTTTTTTTCTTATAAATAT223TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
BR052101 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-44F08 5', mRNA sequence.
EX067457.1:228-247
TTTTTTTGGTTTTTTTTTTCTTATAAATAT228TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
BR057895 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-013C09 5', mRNA sequence.
EX073251.1:341-360
TTTTTTTGGTTTTTTTTTTCTTATAAATAT341TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_833.
FX701820.1:1293-1312
TTTTTTTGGTTTTTTTTTTCTTATAAATAT1293TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7823.
FX734309.1:1492-1511
TTTTTTTGGTTTTTTTTTTCTTATAAATAT1492TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB009G06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240986.1:40415-40434
TTTTTTTGGTTTTTTTTTTCTTATAAATAT40415TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070G10, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241060.1:62285-62304
TTTTTTTGGTTTTTTTTTTCTTATAAATAT62285TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:1741464-1741483
TTTTTTTGGTTTTTTTTTTCTTATAAATAT1741464TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAATGATCAGGACTTCAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATGATCAGGACTTCAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=CAATGATCAGGACTTCAACA&k=0&no_gap=0&offset=0&limit=50
0.490 | 0.286 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTGAAGTCCTGATCATTG&k=0&no_gap=0&offset=0&limit=45
0.497 | 0.006 | cgi_end;

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