GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:12:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7552701-7552720
CAAGTCCTGATAAGATTCTTTGTTTTGCAT7552701CAATTTCCAAAATGGTAAGCCCTTAAAATTCACTTCCCTTGTACTAATTA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:7921252-7921271
TCAAGTCCTGATAAGATTCTTTGTTTGCAT7921252CAATTTCCAAAATGGTAAGCCTTTAAAATTCACTTCCCTTGTACTAATTA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:7292407-7292426
CAAGTCCGGATAAGATTCTTTGTTTTGCAT7292407CAATTTCCAAAATGGTAAGCCTTTAAAATTCACTTCCCTTGTACTAATTA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7787048-7787067
CAAGTCCTGATAAGATTCTTTGTTTTGCAT7787048CAATTTCCAAAATGGTAAGCCTTTAAAATTCACTTCCCTTGTACTAATTA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7616921-7616940
CAAGTCCTGATAAGATTCTTTGTTTTGCAT7616921CAATTTCCAAAATGGTAAGCCTTTAAAATTCACTTCCCTTGTACTAATTA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:6328847-6328866
AGTCCTGATAAGATTCTTTTTTTTTTGCAT6328847CAATTTCCAAAATGGTAAGCCTTTAAAATTCACTTCCCTTGTACTATAAA
Agriphila straminella genome assembly, chromosome: 6.
OX467309.1:5351591-5351610
TCAAATTAATATAGCTTATCTATCATTAAA5351591CAATTTCCAAAATGGTAAGCTTTTGGGTTATTTTTAACGGTGCTTTTTTA
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-05.
CP023117.1:27755276-27755295
TCCACAACTGAAATTGAGGAACGAGAAATG27755276GCTTACCATTTTGGAAATTGAACACTGGTGTTCATGGTGGCCGGTGAGGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:38742868-38742887
TAATTAGCACAAGGGAAGTGAATTTTAAAG38742868GCTTACCATTTTGGAAATTGATGCAAAACAAAGAATCTTATCAGGACTTG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:35527055-35527074
TTTATGGTACAAGGGAAGTGAATTTTAAAG35527055GCTTACCATTTTGGAAATTGATGCAAAACAAAGAATCTTATCAGAGCATG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:39043326-39043345
TAATTAGTACAAGGGAAGTGAATTTTAAAG39043326GCTTACCATTTTGGAAATTGATGCAAACAAAGAATCTTATCAGGACTTGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:38343203-38343222
TAATTAGCACAAGGGAAGTGAATTTTAAAG38343203GCTTACCATTTTGGAAATTGATGCAAAACAAAGAATCTTATCAGGACTTG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:37947333-37947352
TAATTAGCACAAGGGAAGTGAATTTTAAAG37947333GCTTACCATTTTGGAAATTGATGCAAAACAAAGAATCTTATCAGGACTTG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:38505298-38505317
TAATTAGTACAAGGGAAGTGAATTTTAAAG38505298GCTTACCATTTTGGAAATTGATGCAAACAAAGAATCTTATCAGGACTTGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39145699-39145718
TAATTAGTACAAGGGAAGTGAATTTTAAAG39145699GCTTACCATTTTGGAAATTGATGCAAACAAAGAATCTTATCAGGACTTGA
Metopia argyrocephala genome assembly, chromosome: 1.
OY756208.1:201161736-201161755
ATATAATAGTTGATATTCATTTGATCCTAG201161736GCTTACCATTTTGGAAATTGAGGTGGGAAACCAGAATATAAATGTCATAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAATTTCCAAAATGGTAAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATTTCCAAAATGGTAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=CAATTTCCAAAATGGTAAGC&k=0&no_gap=0&offset=0&limit=50
0.119 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTACCATTTTGGAAATTG&k=0&no_gap=0&offset=0&limit=43
0.125 | 0.006 | cgi_end;

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