GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH063_02148m, 5' end sequence.
AB450734.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_01_09, 5' end sequence, expressed in fruit.
HX745710.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_01_12, 5' end sequence, expressed in fruit.
HX745713.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_01_14, 5' end sequence, expressed in fruit.
HX745715.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_01_27, 5' end sequence, expressed in fruit.
HX745727.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_01_34, 5' end sequence, expressed in fruit.
HX745733.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_01_48, 5' end sequence, expressed in fruit.
HX745746.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Pyrus pyrifolia mRNA, clone: NFR1_06_06, 5' end sequence, expressed in fruit.
HX746146.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACG

TSA: Pyrus pyrifolia mRNA, contig: contig_1448.
FX432614.1:186-208

CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

TSA: Pyrus x bretschneideri Unigene30248_XinShao mRNA sequence.
JR623303.1:258-280

CAGCAACAACAATCAGTGAAAGAGTGCGTC258CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA

Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:17637022-17637044

CAGCAACCACAATCAGTGAAAGAGTGCGTG17637022CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA

Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:18590504-18590526

CAGCAACCACAATCAGTGAAAGAGTGCGTG18590504CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA

Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:17484261-17484283

CAGCAACCACAATCAGTGAAAGAGTGCGTG17484261CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA

Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:16991493-16991515

CAGCAACCACAATCAGTGAAAGAGTGCGTG16991493CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA

Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:13731640-13731662

CAGCAACCACAATCAGTGAAAGAGTGCGTG13731640CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA

Malus domestica genome assembly, chromosome: 6.
OU744958.1:13944822-13944844

CAGCAACCACAATCAGTGAAAGAGTGCGTG13944822CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA

Malus x robusta genome assembly, chromosome: 17.
OY720341.1:16940678-16940700

CAGCAACAACAATCAGTGAAAGAGTGTGTC16940678CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACTCCTATCGTCCTCCA

Crataegus laevigata genome assembly, chromosome: 13.
OY756950.1:20398947-20398969

CAGCAACCACAAGCAGTGCAAGAGTGCGTG20398947CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTGTCGTCCTCCA

Potentilla sterilis genome assembly, chromosome: 7.
OY821760.1:39304881-39304903

CAGCAGCCACAGTCAGTGAAGGAATGTCTT39304881CACAAGACCAAGCTCATCCAATTCTTAGGCCGCACCGCCCCTATCGTCCTCCA

Potentilla sterilis genome assembly, chromosome: 12.
OY821765.1:32414844-32414866

CAGCAGCCACAGTCAGTGAAGGACTGTCTT32414844CACAAGACCAAGCTCATCCAATTCTTAGGCCGCACCGCCCCTATCGTCCTCCA

Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:8502465-8502487

TGGAGGACGATAGGAGTGGAGCGTCCCAAA8502465AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:9300662-9300684

TGGAGGACGATAGGAGTGGAGCGTCCCAAA9300662AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:8587946-8587968

TGGAGGACGATAGGAGTGGAGCGTCCCAAA8587946AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:8483398-8483420

TGGAGGACGATAGGAGTGGAGCGTCCCAAA8483398AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:8861837-8861859

TGGAGGACGATAGGAGTGGAGCGTCCCAAA8861837AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:16748273-16748295

TGGAGGACGATAGGCGCGGAGCGTCCCAAG16748273AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG

Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:8139019-8139041

TGGAGGACGATAGGAGTGGAGCGTCCCAAA8139019AATTGGATGAGCTTGGTCTTGTGGACGCACTCTTTCACCGATTGTTGTTGCTG

Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:9205258-9205280

TGGAGGACGATAGGAGTGGAGCGTCCCAAA9205258AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:17154424-17154446

TGGAGGACGATAGGCGCGGAGCGTCCCAAG17154424AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG

Malus domestica genome assembly, chromosome: 4.
OU696680.1:9141656-9141678

TGGAGGACGATAGGAGTGGAGCGTCCCAAA9141656AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus domestica genome assembly, chromosome: 6.
OU696682.1:16939115-16939137

TGGAGGACGATAGGCGCGGAGCGTCCCAAG16939115AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG

Malus domestica genome assembly, chromosome: 4.
OU744545.1:9080986-9081008

TGGAGGACGATAGGAGTGGAGCGTCCCAAA9080986AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus domestica genome assembly, chromosome: 6.
OU744547.1:16857726-16857748

TGGAGGACGATAGGCGCGGAGCGTCCCAAG16857726AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG

Malus domestica genome assembly, chromosome: 4.
OU744956.1:8997591-8997613

TGGAGGACGATAGGAGTGGAGCGTCCCAAA8997591AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus domestica genome assembly, chromosome: 4.
OU744994.1:9215829-9215851

TGGAGGACGATAGGAGTGGAGCGTCCCAAA9215829AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG

Malus domestica genome assembly, chromosome: 6.
OU744996.1:12992304-12992326

TGGAGGACGATAGGCGCGGAGCGTCCCAAG12992304AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG

Potentilla anserina genome assembly, chromosome: 5.
OW176985.1:8790050-8790072

TGGAGGACGATAGGGGCGGTGCGGCCTAAG8790050AATTGGATGAGCTTGGTCTTGTGGAGACAGTCCTTCACTGACTGTGGCTGCTG

Geum urbanum genome assembly, chromosome: 8.
OX327004.1:45417195-45417217

TGGAGAACAATTGGCGCGGTGCGGCCCAAG45417195AATTGGATGAGCTTGGTCTTGTGAAGACAGTCTTTCACTGACTGCGGCGGTGG

Geum urbanum genome assembly, chromosome: 15.
OX327011.1:35830534-35830556

TGGAGAACAATTGGCGTGGTGCGGCCCAAG35830534AATTGGATGAGCTTGGTCTTGTGAAGACAGTCTTTCACTGACTGCGGCGGTGG

Malus x robusta genome assembly, chromosome: 14.
OY720338.1:13221531-13221553

TGGAGGACGATAGGCGCGGAGCGTCCCAAG13221531AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG

Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:9424496-9424518

TGGAGGACGATAGGCGTGGAGCGTCCCAAA9424496AATTGGATGAGCTTGGTCTTGTGGACGCACTCTTTCACTGATTGTTGTTGCTG

Pyrus communis genome assembly, chromosome: 17.
OY757084.1:6259027-6259049

TGGAGGACGATAGGCGTGGAGCGTCCCAAA6259027AATTGGATGAGCTTGGTCTTGTGGACGCACTCTTTCACTGATTGTTGTTGCTG

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Debug Info:

0.008 | 0.008 | search_start;
0.801 | 0.793 | search_plus_done; http://172.18.8.135:50400/match?q=CACAAGACCAAGCTCATCCAATT&k=0&no_gap=0&offset=0&limit=50
0.847 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=AATTGGATGAGCTTGGTCTTGTG&k=0&no_gap=0&offset=0&limit=30
0.862 | 0.015 | cgi_end;

Summary:

Results:

Data Export:

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