GGGenome | Results

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2025-04-11 02:15:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Pyrus communis mRNA, contig: lc19034.
FX627566.1:290-309

AGCAAATAACAATGGACAAAACCCACGGGC290CACAGCATCCCAAGAGACAATAGCCATGACATTTCTTCAGTCTTTGGTTA

TSA: Pyrus x bretschneideri Unigene9346_XinShao mRNA sequence.
JR604469.1:271-290

AGCAAATAACAATGGACAAAACCCACGGGC271CACAGCATCCCAAGAGACAATAGCCATGACCTTTCTTCAGTCTTTGGTTA

TSA: Pyrus pyrifolia mRNA, contig: contig_21582.
FX401684.1:484-503

TAACCAAAGACTGAAGAAAGGTCATGGCTA484TTGTCTCTTGGGATGCTGTGGCCCGTGGGTTTTGTCCATTGTTATTTGCT

Pyrus communis genome assembly, chromosome: 2.
OY757069.1:15719456-15719475

TAACCAAAGACTGAAGAAAGGTCCTGGCTA15719456TTGTCTCTTGGGATGCTGTGGCCTGTGGGTTTTGTCCATTGTTATTTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.118 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=CACAGCATCCCAAGAGACAA&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTCTCTTGGGATGCTGTG&k=0&no_gap=0&offset=0&limit=48
0.147 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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