GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 07:54:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38505419-38505438
CTCAGAAAGAAGTAATGCAATAACATGTGA38505419CACCATACTCAACGCACTGGTATCATTAGAAAAATCCAATGGACAATTCT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38365248-38365267
CTCAGAAAGAAGTAATGCAATAACATGCGA38365248CACCATACTCAACGCACTGGTATCATTAGAAAAATCCAATGGACAATTCT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25567263-25567282
CTCAGAAAGAAGTAATGCAATAACATGCGA25567263CACCATACTCAACGCACTGGTATCATTAGAAAAATCCAATGGACAATTCT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2550036-2550055
AGAATTGTCCATTGGATTTTTCTAATGATA2550036CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2624724-2624743
AGAATTGTCCATTGGATTTTTCTAATGATA2624724CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2704426-2704445
AGAATTGTCCATTGGATTTTTCTAATGATA2704426CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2694998-2695017
AGAATTGTCCATTGGATTTTTCTAATGATA2694998CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2611302-2611321
AGAATTGTCCATTGGATTTTTCTAATGATA2611302CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2719000-2719019
AGAATTGTCCATTGGATTTTTCTAATGATA2719000CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2707259-2707278
AGAATTGTCCATTGGATTTTTCTAATGATA2707259CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2784271-2784290
AGAATTGTCCATTGGATTTTTCTAATGATA2784271CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2824223-2824242
AGAATTGTCCATTGGATTTTTCTAATGATA2824223CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2768484-2768503
AGAATTGTCCATTGGATTTTTCTAATGATA2768484CCAGTGCGTTGAGTATGGTGTCACTTGTTATTGCATTACTTCTTTCTGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCATACTCAACGCACTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCATACTCAACGCACTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CACCATACTCAACGCACTGG&k=0&no_gap=0&offset=0&limit=50
0.114 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGTGCGTTGAGTATGGTG&k=0&no_gap=0&offset=0&limit=47
0.121 | 0.007 | cgi_end;

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