GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:55:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

VBL6_50_B05_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO336218.1:181-202
TATATATATATATAAATTTTTCTACGGTCA181CACCATCCCTTGAAACCTCATACGCTTCTCTGCTCCTTGTTTTCTTCATACC
TSA: Arachis hypogaea Ahy.Unigene3403 mRNA sequence.
JR544020.1:188-209
TCTTAATCCATCAGAATTTTTCTACGGTCA188CACCATCCCTTGAAACCTCATATGCTTCTCTGCTCCTTGTTTTCTTCATACC
Arachis hypogaea cultivar Shitouqi chromosome A04.
CP030986.1:102313691-102313712
TATATATATATATAAATTTTTCTACGGTCA102313691CACCATCCCTTGAAACCTCATACGCTTCTCTGCTCCTTGTTTTCTTCATACC
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:98591305-98591326
TCTTAATCCATCAGAATTTTTCTACGGTCA98591305CACCATCCCTTGAAACCTCATATGCTTCTCTGCTCCTTGTTTTCTTCATACC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:111976073-111976094
TCTTAATCCATCAGAATTTTTCTACGGTCA111976073CACCATCCCTTGAAACCTCATATGCTTCTCTGCTCCTTGTTTTCTTCATACC
Sequence 3260 from Patent EP2519097.
JB350848.1:531-552
GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3261 from Patent EP2519097.
JB350849.1:519-540
GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3260 from patent US 9493785.
KH362759.1:531-552
GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3261 from patent US 9493785.
KH362760.1:519-540
GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3260 from Patent EP3056569.
LQ606409.1:531-552
GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3261 from Patent EP3056569.
LQ606410.1:519-540
GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3260 from patent US 10351873.
MO207981.1:531-552
GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Sequence 3261 from patent US 10351873.
MO207982.1:519-540
GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
AS1RN5P1H02.ab1 Healthy Roots (RN) Arachis stenosperma cDNA 5', mRNA sequence.
EH043930.1:96-117
GGTATGAAGAAAACAAGGAGCAGAGAAGCA96TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGAATTAAGA
TFR5_19_A06_E001.g1 USDA-Tifton Peanut Library TFR5 Arachis hypogaea cDNA clone TFR5-019-41_A06 5', mRNA sequence.
ES720496.1:437-458
GGTATGAAGAAAACAAGGAGCAGAGAAGCA437TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
TFR5_24_F12_E001.g1 USDA-Tifton Peanut Library TFR5 Arachis hypogaea cDNA clone TFR5-024-94_F12 5', mRNA sequence.
ES720744.1:410-431
GGTATGAAGAAAACAAGGAGCAGAGAAGCA410TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
VBL1_39_K11_E001.g1 Normalized cDNA library from cotyledon and young leaves of peanut Arachis hypogaea cDNA, mRNA sequence.
GO266249.1:6-27
AAGCA6TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
VBL6_35_F21_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO331236.1:519-540
GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGCGACCGTAGAAAAATTCTGATGGATTAAGA
Ipa.ADAB-aac45e08.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence.
GW964651.1:518-539
GGTATGAAGAAAACGAGGAGCAGAGAAGCA518TATGAGGTTTCAAGGGATGGTGTGACCGTAAAAAAATTCTGATGGATTAGGA
Ipa.ADAB-aad26f03.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence.
GW969326.1:520-541
GGTATGAAGAAAACAAGGAGCAGAGAAGCA520TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATT
NRL_007219 Root cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocpnra0_0088_G10.ab1, mRNA sequence.
JK185328.1:523-544
GGTATGAAGAAAACAAGGAGCAGAGAAGCA523TATGAGGTTTCAAGGGATGGTGTGACCGTAG
RILL_010018 Ralstonia solanacearum challenged leaf cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocprla0_0119_A02.ab1, mRNA sequence.
JK198952.1:524-545
GGTATGAAGAAAACAAGGAGCAGAGAAGCA524TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
TSA: Arachis hypogaea CL1Contig6479.Arhy mRNA sequence.
EZ727463.1:608-629
GGTATGAAGAAAACAAGGAGCAGAGAAGCA608TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA
Arachis stenosperma clone AS1RN5H02 microsatellite sequence.
DQ099062.1:64-85
GGTATGAAGAAAACAAGGAGCAGAGAAGCA64TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGAATTAAGA
Seladonia tumulorum genome assembly, chromosome: 4.
OU565269.1:7279943-7279964
TTGGGAAATGACCGATTCGATCTGTTTTGA7279943TATGAGGTTTCAAGGGATGGTGTAAAATTCAAGGGAAAATCGAGTATTACGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCATCCCTTGAAACCTCATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCATCCCTTGAAACCTCATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=CACCATCCCTTGAAACCTCATA&k=0&no_gap=0&offset=0&limit=50
1.253 | 1.065 | search_minus_done; http://172.18.8.135:50400/match?q=TATGAGGTTTCAAGGGATGGTG&k=0&no_gap=0&offset=0&limit=45
1.266 | 0.013 | cgi_end;

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