GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:02:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Porphyra yezoensis cDNA, clone:PF033h12_r, 5'end.
AU189064.1:1-18
1CACCCAACATATCGCCGTTGCACCTCCGGTCAATCACCCCGCCTGCCC
Porphyra yezoensis cDNA, clone:PFL065d09_r, 5'end.
AU194790.1:13-30
CCCGCTGCCCGC13CACCCAACATATCGCCGTTGCACCTCCGGTCAATCACCCCGCCTGCCC
Digitaria exilis genome assembly, chromosome: 9A.
LR994620.1:45475719-45475736
ATCCGGCGATAAGTGCTATGGGCCACGGCC45475719CACCCAACATATCGCCGTTTCAAATGGCGGTTACTTGGTTTCGCCGGA
Digitaria exilis genome assembly, chromosome: UA.
LR994622.1:3054532-3054549
ATCCGGCGATAAGTGCTATGGGCCACGGCC3054532CACCCAACATATCGCCGTTTCAAATGGCGGTTACTTGGTTTCGCCGGA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737491.1:191443078-191443095
TTGATGAGCAGGAACGTCTGGGCCTGATCA191443078CACCCAACATATCGCCGTGGGGTTGTGGAGTTCTGTTTGTCAAGAAGA
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737634.1:178967313-178967330
TTGATGAGCAGGAACGTCTGGGCCTGATCA178967313CACCCAACATATCGCCGTGGGGTTGTGGAGTTCTGTTTGTCAAGAAGA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737868.1:186246882-186246899
TTGATGAGCAGGAACGTCTGGGCCTGATCA186246882CACCCAACATATCGCCGTGGGGTTGTGGAGTTCTGTTTGTCAAGAAGA
Agathobaculum sp. NTUH-O15-33 chromosome, complete genome.
CP136187.1:412827-412844
AAAAGCAGTTCTTGTACCACATGCCTCTTT412827CACCCAACATATCGCCGTGGTCTGCAGTTAAAATGATGATCGTGTTTT
uncultured Amylibacter sp. isolate Z_MB383 genome assembly, chromosome: Z_MB383_contig-1.
OX044354.1:1728255-1728272
AAGAGGCGACAATCCTGTTTGTTTCAGACC1728255ACGGCGATATGTTGGGTGAACGTGGGTTATGGTTCAAAATGTCCTTCT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737498.1:181372948-181372965
TTCTTCTTGACAAACAGAACTCCACAACCC181372948ACGGCGATATGTTGGGTGTGATCAGGCCCAGACGTTCCTGCTCATCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCCAACATATCGCCGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCAACATATCGCCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.126 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCAACATATCGCCGT&k=0&no_gap=0&offset=0&limit=50
0.170 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=ACGGCGATATGTTGGGTG&k=0&no_gap=0&offset=0&limit=42
0.172 | 0.001 | cgi_end;

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