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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 20:38:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus carolinensis genome assembly, chromosome: 4.
LR738593.1:87350426-87350445
AAACCACTGAATTTCTCACATCTCTTACCT87350426CACCCAGATCATCACAAAGAAAGGGCATTTAGCATTTTCCAATTCTGTTA
Sciurus vulgaris genome assembly, chromosome: 5.
LR738615.1:88994518-88994537
AAACCACTGAATTTCTCACATCTCTTACCT88994518CACCCAGATCATCACAAAGAAAGGGCATTTAGCATTTTGCAATTCTGTTA
TSA: Corylus avellana CAV_037222.ca, mRNA sequence.
KA430447.1:812-831
ATAGATGCTTGAAGTCTTGCTTCCCCAGAA812CACCCAGATCATCACAAAGAGTTTCAACCTCTTCTGTTGTTAATTCATGA
Corylus americana cultivar Rush chromosome 1.
CP125814.1:30025182-30025201
ATAGATGCTTGAAGTCTTGCTTCCCCAGAA30025182CACCCAGATCATCACAAAGAGTTTCAACCTGCCAGACAATAGCATTTTGA
Corylus americana cultivar Winkler chromosome 1.
CP125825.1:29517929-29517948
ATAGATGCTTGAAGTCTTGCTTCCCCAGAA29517929CACCCAGATCATCACAAAGAGTTTCAACCTGCCAGACAATAGCATTTTGA
Corylus avellana genome assembly, chromosome: ca1.
LR899423.1:34931506-34931525
ATAGATGCTTGAAGTCTTGCTTCCCCAGAA34931506CACCCAGATCATCACAAAGAGTTTCAACCTGCCAGACAATAGCATTTTGA
Ligilactobacillus murinus DNA, complete genome.
AP025728.1:710407-710426
TACTACCTTGGTCGTCACTAAGGGAAATAT710407CACCCAGATCATCACAAAGATGGAAAGACTGGATCTGATCAAAAGAAAAC
Ligilactobacillus murinus strain CR147 chromosome, complete genome.
CP023565.1:236506-236525
TACTACCTTGGTCGTCACTAAGGGAAATAT236506CACCCAGATCATCACAAAGATGGAAAGACTGGATCTGATCAAAAGAAAAC
Ligilactobacillus murinus ASF361 chromosome, complete genome.
CP097561.1:2182191-2182210
TACTACCTTGGTCGTCACTAAGGGAAATAT2182191CACCCAGATCATCACAAAGATGGAAAGACTGGATCTGATCAAAAGAAAAC
TSA: Cannabis sativa PK21313.1_1.CasaPuKu mRNA sequence.
JP450090.1:939-958
TCATGTTTTAACAACACAAGAGGTTAAAAT939TCTTTGTGATGATCTGGGTGTCTTGGGTAAACAAGACTTTAAGCACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq1.
LA638548.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq2.
LA638549.1:1081-1100
TCATGCTTTAACAACAGAAGAGTTTCAAAC1081TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq3.
LA638550.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq4.
LA638551.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq5.
LA638552.1:1442-1461
TCATGCTTTAACAACAGAAGAGTTTCAAAC1442TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq6.
LA638553.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq7.
LA638554.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq8.
LA638555.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq9.
LA638556.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq10.
LA638557.1:1081-1100
TCATGCTTTAACAACAGAAGAGTTTCAAAC1081TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq11.
LA638558.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq12.
LA638559.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq13.
LA638560.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq14.
LA638561.1:1081-1100
TCATGCTTTAACAACAGAAGAGTTTCAAAC1081TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq15.
LA638562.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq16.
LA638563.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq17.
LA638564.1:1442-1461
TCATGCTTTAACAACAGAAGAGTTTCAAAC1442TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq18.
LA638565.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq19.
LA638566.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq20.
LA638567.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq21.
LA638568.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq22.
LA638569.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq23.
LA638570.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq24.
LA638571.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq25.
LA638572.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq26.
LA638573.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq27.
LA638574.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq28.
LA638575.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq29.
LA638576.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq30.
LA638577.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq31.
LA638578.1:1362-1381
TCATGCTTTAACAACAGAAGAGTTTCAAAC1362TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq32.
LA638579.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq33.
LA638580.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq34.
LA638581.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq35.
LA638582.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq36.
LA638583.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq37.
LA638584.1:1190-1209
TCATGCTTTAACAACAGAAGAGTTTCAAAC1190TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq38.
LA638585.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq39.
LA638586.1:1081-1100
TCATGCTTTAACAACAGAAGAGTTTCAAAC1081TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp295169_c0_seq40.
LA638587.1:1001-1020
TCATGCTTTAACAACAGAAGAGTTTCAAAC1001TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
Carpinus viminea chromosome 3.
CP054669.1:8350700-8350719
TCAAAATGCTATTGTCTGGCAGGTTGAAAC8350700TCTTTGTGATGATCTGGGTGTTCTGGGGAAGCAAGACTTCAAGCATCTAT
Humulus lupulus genome assembly, chromosome: 5.
OY720652.1:207875293-207875312
ATTCAATTATGAAATTTGGTAGGTTCAAAC207875293TCTTTGTGATGATCTGGGTGTCTTGGGGAAACAAGACTTTAAGTACCTTT
Ligilactobacillus murinus strain CR141 chromosome, complete genome.
CP023566.1:2104707-2104726
GTTTTCTTTTGATCAGATCCAGTCTTTCCA2104707TCTTTGTGATGATCTGGGTGATATTTCCCTTAGTGACGACCAAGGTAGTA
Ligilactobacillus murinus strain V10 chromosome, complete genome.
CP040852.1:2479562-2479581
GTTTTCTTTTGATCAGATCCAGTCTTTCCA2479562TCTTTGTGATGATCTGGGTGATATTTCCCTTAGTGACGACCAAGGTAGTA
Ligilactobacillus murinus strain PG1-1-10 chromosome, complete genome.
CP120352.1:1619003-1619022
GTTTTCTTTTGATCAGATCCAGTCTTTCCA1619003TCTTTGTGATGATCTGGGTGATATTTCCCTTAGTGACGACCAAGGTAGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCCAGATCATCACAAAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCAGATCATCACAAAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCAGATCATCACAAAGA&k=0&no_gap=0&offset=0&limit=50
0.898 | 0.777 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTTGTGATGATCTGGGTG&k=0&no_gap=0&offset=0&limit=41
0.929 | 0.030 | cgi_end;

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