GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 01:39:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

E7497 [C4611|ss1_a03] Salinity Subtracted Library Eutrema salsugineum cDNA, mRNA sequence.
DN779113.1:447-464
CTACCGTATCCGCCACGTTCACCGCGGTTG447CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAACTCCTTCT
E7523 [C4637|ss1_c05] Salinity Subtracted Library Eutrema salsugineum cDNA, mRNA sequence.
DN779139.1:447-464
CTACCGTATCCGCCACGTTCACCGCGGTTG447CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAACTCCTTCT
E7528 [C4642|ss1_c10] Salinity Subtracted Library Eutrema salsugineum cDNA, mRNA sequence.
DN779144.1:447-464
CTACCGTATCCGCCACGTTCACCGCGGTTG447CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAACTCCTTCT
E7535 [C4649|ss1_d05] Salinity Subtracted Library Eutrema salsugineum cDNA, mRNA sequence.
DN779151.1:447-464
CTACCGTATCCGCCACGTTCACCGCGGTTG447CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAACTCCTTCT
E7553 [C4667|ss1_e11] Salinity Subtracted Library Eutrema salsugineum cDNA, mRNA sequence.
DN779168.1:392-409
CTACCGTATCCGCCACGTTCACCGCGGTTG392CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAACTCCTTCT
E7585 [C4699|ss1_h07] Salinity Subtracted Library Eutrema salsugineum cDNA, mRNA sequence.
DN779199.1:447-464
CTACCGTATCCGCCACGTTCACCGCGGTTG447CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAACTCCTTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_29173.
FX731642.1:891-908
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG891CACCCGCTTTGATCGCTTCTTCAAAAACCGTGCATATATAATCCTTGT
KBrH121C04 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT013275.1:957-974
CCACCGTGTCCGCGAAAGCCACCGTGGTTG957CACCCGCTTTGATCGCTTCTTCAAAACCTTGCATATATAATCCTTTAT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:37017321-37017338
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG37017321CACCCGCTTTGATCGCTTCTTCAAAAACCGTGCATATATAATCCTTGT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21762496-21762513
CTACCGTGTCTGCGAGGTTCACCGTGGTTG21762496CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAAGTCTTTCT
Quercus variabilis isolate HB chromosome 11b.
CP129443.1:45438084-45438101
TCAAAATGTCAATCTGAGCTAGTCAAGGAT45438084CACCCGCTTTGATCGCTTTGATCGCTTTGCCCATGTCCTGAAACTGAT
Quercus variabilis isolate HB chromosome 11a.
CP129455.1:48759263-48759280
TCAAAATGTCAATCTGAGCTAGTCAAGGAT48759263CACCCGCTTTGATCGCTTTGCCCATGTCCTGAAACTGATCGGATAGGG
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31511677-31511694
CCACCGTGTCCGCGAAGGCCACCGTGGTTG31511677CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTAT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31522039-31522056
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG31522039CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTGT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21748754-21748771
CTACCGTGTCTGCGAGGTTCACCGTGGTTG21748754CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAAGTCTTTCT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:59600154-59600171
CCACCGTGTCCGCGAAGGCCACCGTGGTTG59600154CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTAT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:59626306-59626323
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG59626306CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTGT
Brassica rapa genome, scaffold: A03.
LR031572.1:21574624-21574641
CTACCGTGTCTGCGAGGTTCACCGTGGTTG21574624CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAAGTCTTTCT
Brassica rapa genome, scaffold: A02.
LR031573.1:29713529-29713546
CCACCGTGTCCGCGAAGGCCACCGTGGTTG29713529CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTAT
Brassica rapa genome, scaffold: A02.
LR031573.1:29724797-29724814
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG29724797CACCCGCTTTGATCGCTTCTTCAAAAACCGTGCATATATAATCCTTGT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:60854695-60854712
CCACCGTGTCCGCGAAGGCCACCGTGGTTG60854695CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTAT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:60880840-60880857
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG60880840CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTGT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:30645114-30645131
CCACCGTGTCCGCGAAGGCCACCGTGGTTG30645114CACCCGCTTTGATCGCTTCTTCAAAAACCTTGCATATATAATCCTTAT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:30656382-30656399
CCACCGTGTCCGGGCAGGCCAGGGTGGTTG30656382CACCCGCTTTGATCGCTTCTTCAAAAACCGTGCATATATAATCCTTGT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21702683-21702700
CTACCGTGTCTGCGAGGTTCACCGTGGTTG21702683CACCCGCTTTGATCGCTTCTCCTAGAATCTTGCATAGAAAGTCTTTCT
Vibrio nigripulchritudo TUMSAT-TG-2018 DNA, chromosome 1, complete sequence.
AP024087.1:1094394-1094411
TTGTATTGACTGAAAGCTCTGTCATGAATT1094394CACCCGCTTTGATCGCTTCTTCAGCCAGGATGGTCTGAATGTCTTTTG
Vibrio nigripulchritudo TUMSAT-V.nig1 DNA, chromosome 1, complete sequence.
AP027045.1:1094395-1094412
TTGTATTGACTGAAAGCTCTGTCATGAATT1094395CACCCGCTTTGATCGCTTCTTCAGCCAGGATGGTCTGAATGTCTTTTG
Vibrio nigripulchritudo TUMSAT-V.nig2 DNA, chromosome 1, complete sequence.
AP027049.1:1099439-1099456
TTGTATTGACTGAAAGCTCTGTCATGAATT1099439CACCCGCTTTGATCGCTTCTTCAGCCAGAATGGTCTGAATGTCTTTGG
Vibrio nigripulchritudo TUMSAT-V.nig3 DNA, chromosome 1, complete sequence.
AP027052.1:1087983-1088000
TTGTATTGACTGAAAGCTCTGTCATGAATT1087983CACCCGCTTTGATCGCTTCTTCAGCCAGAATGGTCTGAATGTCTTTGG
Citrobacter koseri strain FDAARGOS_393 chromosome, complete genome.
CP023527.1:2128087-2128104
AGTAAAGACGGTATTTGAATGCCAGATCAT2128087CACCCGCTTTGATCGCTTTTTCCGGCTGCCAGAAGCACACCACGTTAT
Citrobacter koseri strain AR_0024 chromosome, complete genome.
CP026709.1:2635680-2635697
AGTAAAGACGGTATTTGAATGCCAGATCAT2635680CACCCGCTTTGATCGCTTTTTCCGGCTGCCAGAAGCACACCACGTTAT
Pantoea agglomerans strain TH81 chromosome, complete genome.
CP031649.1:3239392-3239409
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3239392CACCCGCTTTGATCGCTTCTGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain ASB05 chromosome, complete genome.
CP046722.1:3146429-3146446
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3146429CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain AR1a chromosome, complete genome.
CP059089.1:3258926-3258943
CCAGCAGCCATGCCTGGCGTCCGCCTTTAT3258926CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain FDAARGOS 1447 chromosome, complete genome.
CP077366.1:3660804-3660821
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3660804CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Leisingera sp. M527 chromosome, complete genome.
CP081037.1:3477628-3477645
CTTTGCGCCCAGCGGACCCATCAGCGACTT3477628CACCCGCTTTGATCGCTTAAAGGCCGTGCTGAGCCTTTGGGCGGGCGT
Leisingera sp. M658 chromosome, complete genome.
CP083546.1:3491795-3491812
CTTTGCGCCCAGCGGACCCATCAGCGACTT3491795CACCCGCTTTGATCGCTTAAAGGCCGTGCTGAGCCTTTGGGCGGGTGT
Pantoea agglomerans strain CB1 chromosome, complete genome.
CP084197.1:3245301-3245318
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3245301CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain Pa58 chromosome, complete genome.
CP091099.1:2262547-2262564
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT2262547CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain NBBC-01 chromosome, complete genome.
CP099728.1:3118020-3118037
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3118020CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain AB378 chromosome, complete genome.
CP113085.1:3955338-3955355
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3955338CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans pv. betae strain 4188 chromosome, complete genome.
CP122328.1:3256526-3256543
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3256526CACCCGCTTTGATCGCTTCCGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain 1.2.4 chromosome, complete genome.
CP134149.1:3208215-3208232
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3208215CACCCGCTTTGATCGCTTCTGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain T88c chromosome, complete genome.
CP134719.1:3228253-3228270
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3228253CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain SUH1 chromosome, complete genome.
CP134724.1:3297762-3297779
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3297762CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain MMD61212-C chromosome, complete genome.
CP134733.1:3084361-3084378
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3084361CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain FC61912-B chromosome, complete genome.
CP134737.1:3170290-3170307
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3170290CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain BH6c chromosome, complete genome.
CP134744.1:3276469-3276486
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3276469CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain AR8b chromosome, complete genome.
CP134749.1:3167519-3167536
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3167519CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain AR5 chromosome, complete genome.
CP134753.1:3218950-3218967
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3218950CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain AR24 chromosome, complete genome.
CP134757.1:3209113-3209130
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3209113CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain AJ2b chromosome, complete genome.
CP134761.1:3265928-3265945
CCAGCAGCCACGCCTGGCGCCCGCCTTTAT3265928CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain CFBP8756 chromosome, complete genome.
CP143398.1:3153153-3153170
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3153153CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain CFBP8774 chromosome, complete genome.
CP143407.1:3435171-3435188
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3435171CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain CFBP13593 chromosome, complete genome.
CP143414.1:3272836-3272853
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3272836CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain CFBP13600 chromosome, complete genome.
CP143418.1:3176824-3176841
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT3176824CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
Pantoea agglomerans strain DAPP-PG734 genome assembly, chromosome: 1.
OW970315.1:3229198-3229215
CCAGCAGCCACGCCTGGCGCCCGCCTTTAT3229198CACCCGCTTTGATCGCTTCTGCTGCCGCAACGCCCGGTGGCCAGGCAT
2_Tcm_b3v08.
OE179079.1:753187-753204
CCAGCAGCCACGCCTGGCGTCCGCCTTTAT753187CACCCGCTTTGATCGCTTCCGCTGCTGCAACGCCCGGTGGCCAGGCAT
Melanostoma mellinum genome assembly, chromosome: 1.
OU612058.1:234208613-234208630
ACACAGAATCGTTGGTTAAGGTAAGACAAC234208613CACCCGCTTTGATCGCTTAATTGATCATCAGTCTTCATATTACGATTC
Melanostoma scalare genome assembly, chromosome: 1.
OX456984.1:247535234-247535251
ACACAGAATCGTTGGTTAAGGTAAGACAAC247535234CACCCGCTTTGATCGCTTAATTGATCATCATTCTTCATTCATATTAAA
Perizoma affinitatum genome assembly, chromosome: 11.
OY560195.1:13170351-13170368
ACCTTCTAGAAGAATCTAAAAAAACAAAAT13170351CACCCGCTTTGATCGCTTCAGCGTATAACTTGCATTGGTCGCAAAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCCGCTTTGATCGCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCGCTTTGATCGCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.407 | 0.398 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCGCTTTGATCGCTT&k=0&no_gap=0&offset=0&limit=50
0.464 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=AAGCGATCAAAGCGGGTG&k=0&no_gap=0&offset=0&limit=0
0.464 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).